Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_G16
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 325 4e-90
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 322 4e-89
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 132 8e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 2e-13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 41 2e-04
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 37 0.003
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.11
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 32 0.11
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.20
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.35
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.35
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.61
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 4.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 325 bits (799), Expect = 4e-90
Identities = 144/185 (77%), Positives = 162/185 (87%)
Frame = -1
Query: 703 EFQXXLXXNPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYM 524
EFQ L PRIHFPLVTY+P+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YM
Sbjct: 258 EFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYM 317
Query: 523 ACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 344
A C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV R
Sbjct: 318 ATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNR 377
Query: 343 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 164
AVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYE
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 437
Query: 163 EVGMD 149
EVG D
Sbjct: 438 EVGQD 442
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 322 bits (791), Expect = 4e-89
Identities = 144/185 (77%), Positives = 160/185 (86%)
Frame = -1
Query: 703 EFQXXLXXNPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYM 524
EFQ L PRIHFPLVTYAP+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YM
Sbjct: 254 EFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYM 313
Query: 523 ACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQR 344
A C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV R
Sbjct: 314 ATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDR 373
Query: 343 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 164
AVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYE
Sbjct: 374 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 433
Query: 163 EVGMD 149
EVG D
Sbjct: 434 EVGQD 438
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 132 bits (318), Expect = 8e-32
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Frame = -1
Query: 676 PRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 497
PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGK 320
Query: 496 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 317
V K+V+ I +++TK + FV+W P + PP DL + + + N+T
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNST 372
Query: 316 AIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 149
+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 373 SIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 71.3 bits (167), Expect = 2e-13
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Frame = -1
Query: 688 LXXNPRIHFPLVTYAPVXSA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMA 521
L +PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 260 LIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFIS 319
Query: 520 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 341
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 340 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 170
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 377 --MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 169 YE 164
YE
Sbjct: 435 YE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 40.7 bits (91), Expect = 2e-04
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 4/195 (2%)
Frame = -2
Query: 675 PVSTSHWSRTRQSXLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVT 496
P STS S NS PLP + T ++ +IP ++ V TV
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS-----TSIPPTGNSTTPVTPTVPP 307
Query: 495 SYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST-TSHPPWCPEATWPRFNVP---SACC 328
+ + P P+ S SS+ + S S +T TS PP T VP ++
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 367
Query: 327 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSKRITKKSAWT 148
TPPP T+SS + S SCT TS + +S PV +P + T
Sbjct: 368 STPPPPASTSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTT 425
Query: 147 PLKARVREPKSTKPV 103
P ++ PV
Sbjct: 426 NCTTSTSVPYTSTPV 440
Score = 31.5 bits (68), Expect = 0.15
Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Frame = -2
Query: 678 TPVSTSHWSRTRQSXLPRRPTMNSFPLPRSQTHASS----PPTRW*NAIPVMASTWLAVC 511
TP+ T S T + +S PLP + T ++ PPT +++ + +
Sbjct: 85 TPIITESTSSTSSASTTGS---SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 141
Query: 510 CTVVTSYPRM*TRPSLP---SKP----SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPR 352
T TS P T S S P S +ST + P S S ++ P P T P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLST--PITP--TVPP 197
Query: 351 FNVPSACCPTPPPSLKL----GLALTTSSTSCTPSVLSCTGTS 235
+ S P PP S L T+STSCT S TG S
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 37.1 bits (82), Expect = 0.003
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 10/209 (4%)
Frame = -2
Query: 711 PHX-SSRXXWXXTPVSTSHWSRTRQSXLPR--RPTMNSFPLPRSQTHASSPPTRW*NAIP 541
PH +S + ++ H QS P P +++ PLP S PP +P
Sbjct: 106 PHDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHN-PLPVSCQPVLRPPP-----VP 159
Query: 540 VMASTWLAVCCTVVTSYPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPW 376
+ S W YP P+LP SKP V+ N V P +R + P+
Sbjct: 160 QVPSHW----------YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPY 208
Query: 375 CPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--K 202
++P P+ CP+ PP L A+ SS S ++ + T + + P
Sbjct: 209 SSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSP 268
Query: 201 PVRTWLPSKRITKKSAWTPLKARVREPKS 115
+ WLP + T + P A V +P S
Sbjct: 269 TLAVWLPMTQPT----FQPPSANVYQPAS 293
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 342 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 169
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 168 TKKSAWTPLKARVREPKSTK 109
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.9 bits (69), Expect = 0.11
Identities = 36/139 (25%), Positives = 56/139 (40%)
Frame = -2
Query: 621 PTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVL 442
PT S P PR T S+ R PV+ + A + + P+ SKP+ +
Sbjct: 964 PTSKSKPFPRLATGGSTAAAR--GPRPVVQNKPAAT---------KPVSMPAAKSKPAPM 1012
Query: 441 SNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTP 262
+N PVS + T + PP A R N A P + + A T S++ P
Sbjct: 1013 AN------PVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064
Query: 261 SVLSCTGTSVRVWRRESSP 205
S ++ +S + S+P
Sbjct: 1065 STVTSAASSPSNISKPSAP 1083
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -2
Query: 450 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 271
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 270 CTP--SVLSCTGTS 235
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 29.5 bits (63), Expect = 0.61
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 2/151 (1%)
Frame = -2
Query: 678 TPVSTSH--WSRTRQSXLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCT 505
TP+++S+ + T S N+ L S T +S+P + + AS+
Sbjct: 253 TPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVN 312
Query: 504 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCP 325
T+ T S S + + +ST P+S STT+ T ++
Sbjct: 313 STTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 372
Query: 324 TPPPSLKLGLALTTSSTSCTPSVLSCTGTSV 232
TP S+ A + SST T S S T TSV
Sbjct: 373 TPLTSVNSTSATSASSTPLT-SANSTTSTSV 402
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 504 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 370
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -2
Query: 633 LPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMA---STWLAVCCTVVTSYPRM*TRPSL 463
+P P++ P+ S P R A+PV+ S VV P + RP++
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQR--PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655
Query: 462 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 370
P P S PV V + PP P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 450 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 274
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 273 SCTPSVLS 250
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 450 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 274
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 273 SCTPSVLS 250
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.61
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 462 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 298
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -2
Query: 468 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 292
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 291 LTTSSTSCTP 262
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 399 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 313
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -2
Query: 498 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 328
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 327 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 196
P P P+ + ++S P + + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 592 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 467
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.4
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Frame = -2
Query: 642 QSXLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSL 463
++ L R P+ + PL H S PP IP + +T ++ P + RPSL
Sbjct: 350 RAPLQRTPSGSLTPLSSRPAHTSLPP------IPTVQTT--------SSNVPPV-NRPSL 394
Query: 462 PSK-PSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTP-PPSLKLGLAL 289
SK PSV + S + P+S S + P++ P SA TP PSL+
Sbjct: 395 KSKSPSVSNILSNQLSPIS-SANNDVMARLQPKSPIPATKSYSATIQTPRSPSLR----- 448
Query: 288 TTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS 178
STS V TSV+ + +S V + PS
Sbjct: 449 RADSTSHIIKVPHLPDTSVKTAKTGASEIDVLSRYPS 485
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 464 SDGRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGNGK 607
S G +LGY ++ A++V+A + + HL+ G D K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 459 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 313
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 408 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 250
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 468 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 382
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.9
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -2
Query: 501 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 328
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 327 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 238
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 471 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 376
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,879
Number of Sequences: 5004
Number of extensions: 68393
Number of successful extensions: 272
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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