Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_G10
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 144 2e-35
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 144 2e-35
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.4
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 5.8
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 144 bits (348), Expect = 2e-35
Identities = 91/221 (41%), Positives = 121/221 (54%)
Frame = -2
Query: 773 SHLWKSXFNGGTIXGXK*NGXREHSGEXYPCRFCVLPQDEMIDCIGVTQGQRIQRCHFSL 594
+HL + NGG++ K REH + + Q+EMID IGVT+G+ +
Sbjct: 176 AHLMEIQVNGGSV-ADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 593 AHKEATPVRHTRXLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIHKK 414
K H R L K+ + + + R + T+ L I++
Sbjct: 234 GTKRLPRKTH-RGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYRI 285
Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 286 GAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 89.0 bits (211), Expect = 7e-19
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = -1
Query: 594 GTQRSYPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGXRNPQK 415
GT+R PRKTH+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 628 KGKGYKGVTSRWHTKKLP 575
+GKG +G T+RW TK+LP
Sbjct: 222 RGKGNEGTTARWGTKRLP 239
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 144 bits (348), Expect = 2e-35
Identities = 91/221 (41%), Positives = 121/221 (54%)
Frame = -2
Query: 773 SHLWKSXFNGGTIXGXK*NGXREHSGEXYPCRFCVLPQDEMIDCIGVTQGQRIQRCHFSL 594
+HL + NGG++ K REH + + Q+EMID IGVT+G+ +
Sbjct: 176 AHLMEIQVNGGSV-ADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARW 233
Query: 593 AHKEATPVRHTRXLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLXQGIHKK 414
K H R L K+ + + + R + T+ L I++
Sbjct: 234 GTKRLPRKTH-RGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYRI 285
Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 286 GAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 233 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 89.0 bits (211), Expect = 7e-19
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = -1
Query: 594 GTQRSYPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGXRNPQK 415
GT+R PRKTH+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 628 KGKGYKGVTSRWHTKKLP 575
+GKG +G T+RW TK+LP
Sbjct: 222 RGKGNEGTTARWGTKRLP 239
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 132 HGYTQEGSYSRRSCGYHNPS 73
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 496 SCWSERLSSPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMICLRNPLH 350
S + L S Y + L W +E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 472 SPY*NEQENLSYWXKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 332
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,525
Number of Sequences: 5004
Number of extensions: 68072
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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