Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_G08
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 130 9e-31
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 128 6e-30
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 29 4.1
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 9.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 130 bits (315), Expect = 9e-31
Identities = 60/117 (51%), Positives = 81/117 (69%)
Frame = -2
Query: 670 PGAFTNQIQAAFREXSSLDCIGPCXKTINPLTEASYVNIPVIALCNTDSPLRFVDIAIPC 491
PG FTNQ+Q +F E L P P+ E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDP-RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 490 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 320
N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 168 NNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = -3
Query: 759 VXSSRPFGQRAVLKFAAHTRCYAYCGTFHXQVLLLTRSKLHSVXXRLLIVLDP 601
V S+RP+GQRAVLKFA +T +A G H + + RLLI+ DP
Sbjct: 80 VQSARPYGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDP 131
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 128 bits (308), Expect = 6e-30
Identities = 58/113 (51%), Positives = 78/113 (69%)
Frame = -2
Query: 670 PGAFTNQIQAAFREXSSLDCIGPCXKTINPLTEASYVNIPVIALCNTDSPLRFVDIAIPC 491
PG FTNQ+Q +F E L P P+ E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDP-RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 490 NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 332
N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 168 NNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = -3
Query: 759 VXSSRPFGQRAVLKFAAHTRCYAYCGTFHXQVLLLTRSKLHSVXXRLLIVLDP 601
V S+RP+GQRAVLKFA +T +A G H + + RLLI+ DP
Sbjct: 80 VQSARPYGQRAVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDP 131
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR 147
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +3
Query: 402 WSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVN 581
+++ +T R+L AN H ++ + L G + N+ G+ L +A+TG+L + A +N
Sbjct: 518 FNKVTTARALGQLVANYHSLRALN-----LVGNPVQANV-GDDALRRAVTGLLPHLAYLN 571
Query: 582 GLMVLXQGPIQSRDXXSRNA 641
V +G + SR A
Sbjct: 572 KQPVKPRGAAPADGAVSRAA 591
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 456 HIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVNGL 587
H+ + L LH A S N ES LH+A+ EA V L
Sbjct: 1337 HLTEVHTRSLELHSAAESKNEEIESKLHEALEMAAQKEAEVKDL 1380
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 362 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 478
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,732,088
Number of Sequences: 37544
Number of extensions: 356357
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -