Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G03
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.14 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.98 
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.0  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   5.2  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   6.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.2  

>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -2

Query: 275 PPAQLVYFHETLASHHYRGSMSSLQSGAGGFSCLSGKSTGSSCPSR--WCEPPPPRAP-H 105
           PP      ++        GS S + +G GGF  + G   GS       +  PPPPR P  
Sbjct: 51  PPGTTTVVYQKDVPRSSDGSRS-MTAGLGGF--MVGALAGSVLRGHRAYYAPPPPRGPLF 107

Query: 104 SSLAGGPHHETGHG 63
               GG HH   HG
Sbjct: 108 GPRIGGGHHGPLHG 121


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 412 QPFRSSTERPSSAPPPTHNAELTSSTGLWSSCSPLXHG 525
           QP    ++  SS PP T N   T STG  SS +   HG
Sbjct: 17  QPQEQGSDN-SSEPPTTSNVNNTQSTGRGSSGTSTEHG 53


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -2

Query: 524 PCXRGEHELHNPVDEVNSALCVGGGADEGRSVLERKGWREGEHYHRVEPXPAVPRXGRAX 345
           PC R   + +    E+N  + VGG     R V   K   + E    V P  AV   G A 
Sbjct: 362 PCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFKREPAKSVNPDEAV-AIGAAI 420

Query: 344 QG 339
           QG
Sbjct: 421 QG 422


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 146 PSRWCEPPPPRAPHSSLAGGPHHETGHGSD 57
           P+ W  PPPPR  H       HH   + SD
Sbjct: 43  PTYWYPPPPPR--HHKEHKKSHHHWEYSSD 70


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 EHELHNPVDEVNSALCVGGGADEGRSVLERKGWREGEH 396
           +HE  N ++  N ALC+G    +  ++ E    ++ E+
Sbjct: 297 QHEQENMMNAQNLALCIGPSFSKADNIAELMSMKDKEY 334


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 406 SRQPFRSSTERPSS-APPPTHNAELTSSTGLWSSCSP 513
           S+ P  +++ RPSS APP  H   +TS +  + +  P
Sbjct: 207 SQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,144
Number of Sequences: 5004
Number of extensions: 36877
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)