Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_G03
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   3.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   3.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +1

Query: 397 CSPSRQPFRSSTERPSSAPPPTHNAELTSSTGLWSSCSPLXHG-ERYAVSQNIEVPG*NA 573
           CSP    F  +T +        HN  + +STG+    S +    +    +  I     +A
Sbjct: 154 CSPKLLAFDLNTSKLLKQIEIPHNIAVNASTGMGGPVSLVVQAMDPMNTTVYIADDRGDA 213

Query: 574 LRVFAEHDDLVHRSLAQT 627
           L ++   DD  HR  ++T
Sbjct: 214 LIIYQNSDDSFHRLTSKT 231


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 242 LASHHYRGSMSSLQSGAGGFSCLSGKSTGSSCPS 141
           LAS       S L  G GGF    G      CPS
Sbjct: 6   LASFLLLAVFSMLVGGFGGFGGFGGLGGRGKCPS 39


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 242 LASHHYRGSMSSLQSGAGGFSCLSGKSTGSSCPS 141
           LAS       S L  G GGF    G      CPS
Sbjct: 6   LASFLLLAIFSMLVGGFGGFGGFGGLGGRGKCPS 39


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 125 PPPRAPHSSLAGGPHHETGH 66
           P PR PH  L   P  E G+
Sbjct: 107 PQPRPPHPRLRREPEAEPGN 126



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 125 PPPRAPHSSLAGGPHHETGH 66
           P PR PH  L   P  E G+
Sbjct: 133 PQPRPPHPRLRREPEAEPGN 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,767
Number of Sequences: 438
Number of extensions: 2974
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)