Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F21
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         31   1.5  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   3.5  
12_02_1174 - 26696869-26698191                                         29   4.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   4.7  
08_02_1012 + 23550314-23551504                                         29   6.2  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
 Frame = +1

Query: 562 AXXXPRXTMTPXXXGEXPRP---PXTPXXXXAXRSPXPKXXXPSPPXXLPXXPXXXLSXX 732
           A   P+ T TP      P+P   P TP       +P P    P+P    P  P    +  
Sbjct: 72  AYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPP----TYK 127

Query: 733 TXXLXTPXPXXXXPPXXTXXP 795
                TP P    P   T  P
Sbjct: 128 PQPKPTPAPYTPTPTPPTYKP 148


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
 Frame = +1

Query: 574 PRXTMTPXXXGEXPRPPX-TPXXXXAXRSPXPKXXXPSPPXXLPXXPXXXLSXXTXXLXT 750
           P  T +P      P PP  TP        P P    PSPP   P  P       +    T
Sbjct: 561 PEVTPSPPEITPYPSPPEVTPGPPEITPYPSPPEITPSPPEITP-YPSPPEVVPSPPKIT 619

Query: 751 PXPXXXXPPXXTXXP 795
           P P    PP  T  P
Sbjct: 620 PYP---SPPEVTPSP 631


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 613 PRPPXTPXXXXAXRSPXPKXXXPSPPXXLPXXP 711
           P PP  P    + + P P    PSPP   P  P
Sbjct: 92  PPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP 124


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/69 (26%), Positives = 22/69 (31%)
 Frame = +1

Query: 589 TPXXXGEXPRPPXTPXXXXAXRSPXPKXXXPSPPXXLPXXPXXXLSXXTXXLXTPXPXXX 768
           TP      P+PP  P      + P      PSPP   P  P          +  P P   
Sbjct: 236 TPAVVEPKPQPPPPPPRAPV-KMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKP 294

Query: 769 XPPXXTXXP 795
            PP  +  P
Sbjct: 295 KPPPPSPPP 303


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +1

Query: 562 AXXXPRXTMTPXXXGEXPRPPXTPXXXXAXRSPXPKXXXPSPP 690
           A   P  + +    G  P PP  P    A R P P    P PP
Sbjct: 332 APPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPP 374


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 613 PRPPXTPXXXXAXRSPXPKXXXPSPPXXLPXXP 711
           PRPP  P        P P+   P+ P  +P  P
Sbjct: 150 PRPPPAPSPQKQQPQPQPRSPRPASPPPVPAAP 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,762,500
Number of Sequences: 37544
Number of extensions: 177709
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)