Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F20
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    93   4e-20
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    28   2.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.6  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   6.2  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   8.2  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   8.2  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
 Frame = -1

Query: 780 WXAQNPFMFWVXFIVLIVCLIAMACCPDVRRKAPTNFIFLAIFTAAQSFLLGISASVYEA 601
           W   +P+   + F + +V L  +   P      P N+IFL +FTA +   LG + + + A
Sbjct: 89  WVQMHPWFLILNFFISLVVLFGLIMKP---YSYPRNYIFLFLFTALEGLTLGTAITFFSA 145

Query: 600 DAVLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVKG-KVITL 424
             +L AV IT  V + LT F  Q+KWDF+ +GG L  +   L++  ++  FV     I +
Sbjct: 146 RIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDM 205

Query: 423 VYASLGALIFSIYLVYDTQLMMGGKHKYSISPEEYIFAA 307
            +A  G L+F  Y+++DT  ++   H+Y  SPEE+I ++
Sbjct: 206 AFAGFGTLVFCGYILFDTYNIL---HRY--SPEEFIMSS 239


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 334 DAVL-VLAPHHQLGVVDEVNGEYESAQGRVHERYDLTFHE-YRHDTEYKEDDGGAEQHAA 507
           D +L VL P     V DEV        G +H RY LT    Y+   +YK+ D G      
Sbjct: 58  DLILDVLDPDLPEEVQDEVEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVL 117

Query: 508 HHGE--VPLGL 534
            +G+  +P+GL
Sbjct: 118 CNGQPMLPVGL 128


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 694 HVGTARHRDETDYQHYEGHPEHEGILGPPD 783
           H G   HR   D +H++G  + E   GP D
Sbjct: 350 HEGPEHHRGPEDKEHHKGPKDKEHHKGPKD 379


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/94 (19%), Positives = 34/94 (36%)
 Frame = +1

Query: 379 DEVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGAEQHAAHHGEVPLGLQSEQSQAQ 558
           D  N E + +  R+H    L  +       + +DD      +         L ++Q   +
Sbjct: 160 DRQNEENQPSARRIHGW--LAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQCITR 217

Query: 559 AHGRRYANCHQHRIRFVDACANAEQEALRCREDG 660
              R     H H ++ V+ C ++    + C  DG
Sbjct: 218 LGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDG 251


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 385 PRLRHPADDGGQAQVQHLARG 323
           P L H A+D G A V+++A+G
Sbjct: 362 PMLAHKAEDEGIAAVEYIAKG 382


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 696 VRRKAPTNFIFLAIFTAAQSFLLGISASVY 607
           +RR +    +F ++ T  Q+FL+ ++  VY
Sbjct: 310 IRRTSKKMVLFFSLLTCGQAFLVNVAPMVY 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,847
Number of Sequences: 5004
Number of extensions: 50785
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)