Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F19
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.027
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.57
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.76
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = +3
Query: 546 RPXIXPXPXPXXXPXXPXXXPX-PXXXPPXXXPXPPXXXPPAPXPXPPXPXXXPXXXXXX 722
RP P P P P P P PP PP P AP PP P
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
Query: 723 PP 728
PP
Sbjct: 198 PP 199
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +3
Query: 573 PXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXPXXXXXXPPP 731
P P P P PP P P PP+P PP P P PPP
Sbjct: 124 PPSAPAPPT--PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 35.5 bits (78), Expect = 0.009
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +3
Query: 546 RPXIXPXPXPXXXPXXPXXXPX-PXXXPPXXXPXPPXXXPPAPXPXPPXPXXXPXXXXXX 722
RP I P P P P P P P PP P P PP+ P P P
Sbjct: 146 RPSIPP-PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS---APSLPSAVPPMPPKV 201
Query: 723 PPP 731
PPP
Sbjct: 202 PPP 204
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +2
Query: 623 PPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPPPXXRXXXXXPXCXP 769
PP PT PP PP PP PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Frame = +2
Query: 566 PXPXXXPRXP-XXPPXXXXXPPPXXTXPTXXXPXXP---PPXXPPTXXXXPPXEXXPPP 730
P P P P PP PP + P P P PP P PP PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 601 PXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPP 732
P P PP PP P PP P PPP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 549 PXIXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXP 692
P I P P P P P P PP P PP P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXT----XPTXXXP---XXPPPXXPPTXXXXPP 709
P P P R P P PPP P+ P PPP P PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 555 IXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXP 692
I P P P P P P P P P PP P P PP P
Sbjct: 740 IVPTPAPAPIPVPP---PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 606 PXPXXXPPXXXPXPPXXXPPAP-XPXPPXPXXXPXXXXXXPPP 731
P P P P P PPAP PP P P PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 566 PXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPPP 730
P P P P PPP P P PPP P PP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA---PIMGGP-PPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +1
Query: 601 PXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPPXPSP 744
P P PPP PP PP PP P P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 561 PXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXP 704
P P P P P P P PP P PP P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Frame = +3
Query: 549 PXIXPXPXPXXXPXXPXXXPXPXXXPP---XXXPXPPXXXPPA 668
P P P P P P P PP P PP PPA
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +2
Query: 566 PXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPPP 730
P P P P P PPP P PPP PP P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP-PPPAVSAGGSRYYAPAP 797
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +1
Query: 607 PXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPPXPSP 744
P P P P PP PP PP P PPP P P
Sbjct: 742 PTPA-PAPIPVPPPAPIMGGPPPPPPP-----PGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 623 PPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPPPXXRXXXXXPXCXP 769
PPP PT P P P PP PPP P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPP 781
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = -2
Query: 730 GGGXXFXXXGXXXGX-GGXGXGAGGXXXGGXGXXWGGXXXGXGXXXGXXGXXXGXGXGXX 554
GG F G G GG G G GG G G +GG G G G G G G
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGPGGFGGGLGGFGGGPGGFGGGP 265
Query: 553 XG 548
G
Sbjct: 266 GG 267
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 729 GGGXXSXGGXXXXVGGXXGGGXXGXXXVGXVXXGGGXXXXXGGXXGXRGXXXGXG 565
GGG GG G G G G GGG GG G G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -2
Query: 730 GGGXXFXXXGXXXGXGGXGXGAGGXXXGGXGXXWGGXXXGXGXXXGXXGXXXGXG 566
GG F G G G G GG G GG G G G G G G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGP---GGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 594 PXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXPXXXXXXPPP 731
P P P P PP PP P PP P PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +3
Query: 549 PXIXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXP 692
P + P P P P PP P PP+ P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS-APPPPLP 1736
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = +2
Query: 557 PXXPXPXXXPRX--PXXPPXXXXXPPPXXTXPTXXXPXX-PPPXXPPTXXXXPP 709
P P P+ P PP PPP P P PPP P + P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 585 PXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXP 692
P P P P PP P P PP P P P
Sbjct: 1708 PPPPMSVPPPPSAPPM--PAGPPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/62 (29%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Frame = +3
Query: 549 PXIXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXP-PAPXPXPPXPXXXPXXXXXXP 725
P P P P P PP P PP P PA P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPP-PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Query: 726 PP 731
P
Sbjct: 1745 NP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXP-PXEXXPPPX 733
P P P P P P P P P PP P+ P P PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 734 XRXXXXXP 757
+ P
Sbjct: 1143 PKPSVAAP 1150
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Frame = +3
Query: 555 IXPXPXPXXXPXXPXXX------PXPXXXPPXXXPXPPXXXPPAPXPXPPXP 692
+ P P P P P P P PP P PAP PP P
Sbjct: 1111 VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Frame = +3
Query: 561 PXPXPXXXPXXPXXX------PXPXXXPPXXXPXPPXXXPPAPXP---XPPXPXXXPXXX 713
P P P P P P P PP P P PP P P PP P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPV--PKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 714 XXXPP 728
PP
Sbjct: 1190 PVPPP 1194
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 577 GXXPXXRXPXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPPXPSP 744
G P + P PPP PP P PP PP P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 561 PXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXP 704
P P P P P P PP P A P P P P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Frame = +3
Query: 561 PXPXPXXXPXXPXXXPXPXXXPPXXXPX--PPXXXPPAPXP---XPPXP 692
P P P P P P P PP PP P P PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXP 706
P P P P P PPP P PP PT P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/53 (26%), Positives = 14/53 (26%)
Frame = +1
Query: 586 PXXRXPXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPPXPSP 744
P P P P P PP P P P PP P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Frame = +3
Query: 555 IXPXPXPXXXPXXPXXX------PXPXXXPPXXXPXPPXXXPPAPXP---XPPXP 692
+ P P P P P P P PP P P PP P P PP P
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV--PTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPPP 730
P P P P P PPP P+ P P P P P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPA-PSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/68 (23%), Positives = 18/68 (26%), Gaps = 1/68 (1%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXP-PXEXXPPPX 733
P P P P P P P P PP P+ P P PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 734 XRXXXXXP 757
+ P
Sbjct: 1162 PKPSVAAP 1169
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +3
Query: 546 RPXIXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXP 704
+P + P P P PP PP PP P P P P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPV---PPPSEAPPVPKPSVGVPPVPP 1212
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +1
Query: 601 PXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPP-PXPSPXXP 753
P P P PP P PP PP P PP P P+ P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPP----VPTPSAGLPPVPVPTAKAP 1237
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 612 PXXXPPXXXPXPPXXXPPAPXPXPPXP 692
P PP P PP PP+ P PP P
Sbjct: 5 PPGNPPPPPP-PPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 659 PXXPPPXXPPTXXXXPPXEXXPPP 730
P PP PP PP + PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +1
Query: 586 PXXRXPXPXPXXPPPXXXPPHXXXXXXPPXXXPPXXXXXPXXXXXXPPPXPSPXXP 753
P P P P PPP PP P P PPP +P P
Sbjct: 229 PKQADPLPAPPPPPPPTLPPQSTNTSQLP--MPSRNVNNLGSQVNIPPPPATPSQP 282
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/55 (27%), Positives = 16/55 (29%)
Frame = +2
Query: 521 PXRSXXXXXXXXPXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXP 685
P RS P P P P PPP + P PPP P
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPP--------PXXPPTXXXXPPX 712
P P P P P PP PP P PP P P PP
Sbjct: 415 PPVPTPPSLP--PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 713 EXXPPP 730
PPP
Sbjct: 473 APAPPP 478
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/60 (28%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Frame = +3
Query: 549 PXIXPXPXPXXXPXXPXXXPXPXXXPPXXXPXPP-XXXPPAPXPXPPXPXXXPXXXXXXP 725
P P P P P P PP PP PA P PP P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Frame = +3
Query: 573 PXXXPXXPXXXPXPXXXP--PXXXPXPPXXXP-PAPXPXPP 686
P P P P P P P P P P PAP P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/57 (24%), Positives = 14/57 (24%)
Frame = +3
Query: 561 PXPXPXXXPXXPXXXPXPXXXPPXXXPXPPXXXPPAPXPXPPXPXXXPXXXXXXPPP 731
P P P P P P PP P PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 557 PXXPXPXXXPRXPXXPPXXXXXPPPXXTXPTXXXPXXPPPXXPPTXXXXPPXEXXPP 727
P P P P P P PP P P PP PP P
Sbjct: 429 PSLP-PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -3
Query: 726 GGXXSXGGXXXXVGGXXGG-GXXGXXXVGXVXXGGGXXXXXGGXXGXRGXXXGXG 565
G GG GG GG G G G GGG GG G G G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGA--RGGGRGGARGGRGGRGGARGGRG 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,277
Number of Sequences: 5004
Number of extensions: 20723
Number of successful extensions: 347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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