Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F18
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          100   1e-21
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    97   1e-20
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.6  
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    29   3.4  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  100 bits (240), Expect = 1e-21
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = -2

Query: 613 GGHFGRFVI*LSPHSAGLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 434
           GGH GRFVI        L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V+
Sbjct: 248 GGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVV 307

Query: 433 RAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 260
           +  NK V R  ++ NPL N  A+LKLNPY    ++ A L E  R K  K   D++++ L
Sbjct: 308 KPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 689 IXAFRNXPGVEXXXXXXXXXXXLAPGRSFWTFRHLTQSAFGRA*PLIRVME-DTIETKEE 513
           + AFRN PGV+           LAPG     F   T+SAF +   +    E  +++ K  
Sbjct: 223 VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGF 282

Query: 512 LQPAP 498
           + P P
Sbjct: 283 ILPRP 287


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
 Frame = -2

Query: 613 GGHFGRFVI*LSPHSAGLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 434
           GGH GRFVI        LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V+
Sbjct: 247 GGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVV 306

Query: 433 RAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLK 257
           +  NK V     + NPL N  A+LKLNPY    ++ A L E  R K      D++++ L 
Sbjct: 307 KPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLS 366

Query: 256 LSKRNPAMKAEK 221
             + +    A K
Sbjct: 367 PEESSKIKAAGK 378


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 353 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 442
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -2

Query: 538 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 371
           K P+KQ K    PQ +++  D +R   + K  + +  L A +     + + K  P   + 
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468

Query: 370 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 203
           A LK       +++   L L R+K L     A+ +     +    +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,402
Number of Sequences: 37544
Number of extensions: 289441
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)