Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F17
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 172 4e-44
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 164 1e-41
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 31 0.26
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 28 1.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 1.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 4.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 7.5
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 7.5
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 7.5
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.9
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 172 bits (419), Expect = 4e-44
Identities = 85/139 (61%), Positives = 102/139 (73%)
Frame = -1
Query: 470 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 291
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 290 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 111
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 110 VRLARDYDALDVANKIGII 54
V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 164 bits (399), Expect = 1e-41
Identities = 81/139 (58%), Positives = 99/139 (71%)
Frame = -1
Query: 470 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 291
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 290 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 111
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 110 VRLARDYDALDVANKIGII 54
V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 39 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 155
+W +++ A FV + + +S +RFL ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 480 YFF-LSLNPSLFGLRCNLQFGNCWAWVWQFWLLL 578
YF + L P++ + G+ +W W+FW+LL
Sbjct: 169 YFLGICLGPAIAPIASGFIAGSSISWRWEFWILL 202
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = -2
Query: 289 NSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLRSRNSMI*MLLKSTHSSGLMVRRKRT 110
N L +L+ R +K+T+ T + S+++S + + L T + L+ +
Sbjct: 396 NLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSL--DTERADLLAKINEK 453
Query: 109 YDSLEIMTHWTLPTKLASYKLFH 41
+SLE+ H +L +LFH
Sbjct: 454 IESLELEKHDQQKKRLTYSELFH 476
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 306 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 479
+ A + R P R P+ RF+ L S++ + + PY+ P F S + + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255
Query: 480 YFFLSLNPSL 509
S PSL
Sbjct: 256 RRTKSATPSL 265
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 502 PVFLGFGAIFNLETAGLGFGSFG 570
P F GFG+ N G G G FG
Sbjct: 333 PAFSGFGSTTNTTNTGTGTGLFG 355
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 81 QCVIISSESYVRFLLTIRPDECVDFSNIY 167
+C+ I E + FL I+P E V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 45 NSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDFSNIYIIEFLDRSL 194
++ +NF NV C I +S F IRPD + II+ L +SL
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPDTVRTTAMKAIIKKLLKSL 915
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 331 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLRSRNSM 170
+ L IA+ T SL + K+ R + T PW +L +Q I +RS+ +
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRL 386
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +3
Query: 477 HYFFLSLNPSLFGLRCNLQFGNCWAWVWQFWLLL 578
++ LS+ P + + + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = -1
Query: 311 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 159
+ A+++ +F E ++ +DN T I H + ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +3
Query: 477 HYFFLSLNPSLFGLRCNLQFGNCWAWVWQFWLLL 578
++ LS+ P + + + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +3
Query: 477 HYFFLSLNPSLFGLRCNLQFGNCWAWVWQFWLLL 578
++ LS+ P + + + W W+FW+LL
Sbjct: 172 YFTVLSIGPGIAPIISGFISQSSIGWQWEFWILL 205
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 24 FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 155
F S +W ++ A F+ + + ++ +RFL +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,700
Number of Sequences: 5004
Number of extensions: 47667
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -