Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F13
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   152   4e-38
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   2.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.7  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   3.7  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.5  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  152 bits (369), Expect = 4e-38
 Identities = 63/99 (63%), Positives = 87/99 (87%)
 Frame = -2

Query: 636 IAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALAVALMTTS 457
           + +KRI +KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV++TTKGEA+A+ +A M+T 
Sbjct: 269 VGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTV 328

Query: 456 TMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 340
            +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 329 ELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367



 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 22/30 (73%), Positives = 28/30 (93%)
 Frame = -3

Query: 737 MVTMHDILDAQWSYENHQDETYLRRVIKPL 648
           +VTMHD+LDAQW Y+N +DE+YLRRVI+PL
Sbjct: 235 IVTMHDVLDAQWIYDNTRDESYLRRVIRPL 264



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -3

Query: 353 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 255
           +KK+   +GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/64 (29%), Positives = 37/64 (57%)
 Frame = -3

Query: 395 TRTPENGVSDRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVRG 216
           T+ P+   S  K  +K S+  +   +K  KP+   P++   S++ YN+K +P +G G+R 
Sbjct: 122 TKKPQE--SSEKYSKKSSTRKKEHFNK--KPS--FPRDTEYSHI-YNMKYDPRSGIGIRV 174

Query: 215 RQQK 204
           ++Q+
Sbjct: 175 KRQE 178


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 395 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 565
           S   +T +S  +T  ++  + VD+    TA++T        T+S+ST +P+  S L  P 
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272

Query: 566 NS 571
           +S
Sbjct: 273 SS 274


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/43 (23%), Positives = 27/43 (62%)
 Frame = -3

Query: 332 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVRGRQQK 204
           QG+LD + KP  ++PK+ +++    + K++ ++  G   ++++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 240 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 413
           RF+L+   D + + P  W   ++ + +F + P  +     +R   RDP+ W   L+   H
Sbjct: 62  RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121

Query: 414 A 416
           A
Sbjct: 122 A 122


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 284 LLVCSHLVCHICQVSLXCM 340
           +L C+H +CH+C + L  +
Sbjct: 93  VLPCNHRMCHVCALRLRAL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,750
Number of Sequences: 5004
Number of extensions: 51574
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)