Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F09
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 225 4e-60
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 113 3e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 8e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 2e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 65 9e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 62 1e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 4.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 4.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 4.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 4.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 4.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 4.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 4.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 4.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 4.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 4.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.1
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 225 bits (551), Expect = 4e-60
Identities = 103/119 (86%), Positives = 109/119 (91%)
Frame = -2
Query: 685 APEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 506
APE FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKE
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 505 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 329
I ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 317 IQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = -1
Query: 737 YEXPDGQVITIGNEKFRCPRGXFPTXVLG 651
YE PDGQVITIGNE+FR P F LG
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALG 268
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 113 bits (272), Expect = 3e-26
Identities = 51/119 (42%), Positives = 80/119 (67%)
Frame = -2
Query: 685 APEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 506
APE F P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 505 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 329
+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 322 LRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 737 YEXPDGQVITIGNEKFRCPRGXFPTXVLG 651
Y+ PD Q IT+G E F P F ++G
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMG 273
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.5 bits (227), Expect = 8e-21
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 6/132 (4%)
Frame = -2
Query: 709 LSXTKNSVAPEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 530
+ T+N+ + + GI + N I +CDVDIR L N ++ GGT++ G
Sbjct: 302 IEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQG 361
Query: 529 IADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDES 359
+ R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 362 FSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEH 420
Query: 358 GP---SIVHRKC 332
G +++ ++C
Sbjct: 421 GSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 1e-20
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 637 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 464
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 463 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 356
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 90.6 bits (215), Expect = 2e-19
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 12/121 (9%)
Frame = -2
Query: 682 PEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 503
PE FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI
Sbjct: 258 PECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEI 317
Query: 502 TAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDES 359
L P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E
Sbjct: 318 KQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEY 377
Query: 358 G 356
G
Sbjct: 378 G 378
Score = 34.3 bits (75), Expect = 0.020
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 737 YEXPDGQVITIGNEKFRCPRGXFPTXVLG 651
Y PDG+VI +G+E++ CP F ++G
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVG 268
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Frame = -2
Query: 688 VAPEXXFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 512
+APE F P + + E N + +D+RK LY N VLSGG+T++ +R+Q
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347
Query: 511 KEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 374
+++ + + + +I+ ++ +VW GGS+LA F +K
Sbjct: 348 RDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKA 407
Query: 373 EYDESGPSIVHR 338
+Y+E G SI R
Sbjct: 408 DYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.5 bits (150), Expect = 2e-11
Identities = 29/113 (25%), Positives = 58/113 (51%)
Frame = -2
Query: 682 PEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 503
PE F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+
Sbjct: 599 PEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKREL 658
Query: 502 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 344
T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 659 TSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 61.7 bits (143), Expect = 1e-10
Identities = 35/116 (30%), Positives = 55/116 (47%)
Frame = -2
Query: 682 PEXXFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 503
PE F PS + + GI E S+ +I+ L N V GG +PG R+ E+
Sbjct: 284 PELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSEL 343
Query: 502 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 335
+LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 344 RSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 583 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 413
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 412 SLSTFQQMWISKQEYDESGPSIVHRK 335
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 436 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 335
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 692 FRCPRGXFPTXVLGYG 645
FRCPRG F V+ YG
Sbjct: 522 FRCPRGVFEYLVMPYG 537
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 444 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 349
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 511 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 401
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 554 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 375
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 374 GV 369
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,531
Number of Sequences: 5004
Number of extensions: 51501
Number of successful extensions: 161
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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