Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F08
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.56 
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   6.9  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    26   6.9  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   9.2  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 130 RWSRASDRLTSFTVRNVINTGITGSWLSWS 41
           R + ASD LT    +N+ N   TGSWL WS
Sbjct: 138 RSTTASDILTKLGYKNIGN--YTGSWLEWS 165


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 706 DSSPWSVARAAAKSDKIRKKLRWAWNSSAGSAVLTPQRNDHLCAC 572
           +SSP S+A+  ++  K RK+       +  + V   Q N HL +C
Sbjct: 134 NSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSC 178


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 727 VRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWNSSAGSAV 608
           +++      +PW +AR + KS K     ++ ++SSAG  +
Sbjct: 176 IKKLETQSGAPWGLARISHKSVKYDDIGKYVYDSSAGDNI 215


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 632 EQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKW 492
           ++L+R S+      R  ++  +R+  HA+V      E  R+P+   W
Sbjct: 21  KKLKRLSKQGGVEGRLPMKRLFRQRAHANVLSDHELEYPRSPSEMDW 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,755
Number of Sequences: 5004
Number of extensions: 64524
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)