Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F08
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0673 - 5491694-5493102,5493386-5493995 31 0.77
02_03_0207 - 16421134-16421243,16421977-16422283 31 1.0
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 1.8
01_06_0527 - 30018814-30019638 30 1.8
04_03_0226 - 12977443-12977895 30 2.4
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 29 4.1
10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340 29 5.4
12_02_1216 + 27077570-27078313 28 7.2
11_01_0422 + 3246528-3248606 28 7.2
09_06_0196 - 21481662-21481720,21481898-21483245 28 7.2
06_01_1204 + 10397131-10398498 28 7.2
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 28 7.2
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 28 7.2
01_01_0068 + 532786-533139 28 7.2
10_02_0095 + 5243703-5243965,5244061-5244173,5244432-5244481,524... 28 9.5
01_06_0302 - 28318910-28318999,28319118-28319210,28319303-283193... 28 9.5
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Frame = +3
Query: 417 WEGVDMSVHELHEVPSGYLRASLPNPL-----CGCRGACGFAKFASINRCMQMFSPKQAH 581
W + S E+H P L A P+P CG G C CM+ FS K
Sbjct: 214 WSQANQSWAEVHAEPWAQLYAQPPDPCTPFATCGPFGICN-GNSEQFCDCMESFSQKSPQ 272
Query: 582 RWSLR 596
W L+
Sbjct: 273 DWKLK 277
>02_03_0207 - 16421134-16421243,16421977-16422283
Length = 138
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 363 GQRRLTPTSTPSRSANAGWEGVDMSVHELHEVPSGYLRASLP-NPLCGCRGACGFAKFAS 539
G R + PT TPS +A A W VP+ L P + G AC ++K
Sbjct: 65 GTREVAPTVTPSPAAKAVWREPACEARMREAVPTVALSGHAPFEGVLGKNPAC-YSKIGD 123
Query: 540 INRC 551
I+ C
Sbjct: 124 IDAC 127
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 498 CGCRGACGF-AKFASINRCMQMFSPKQAHRWSLR 596
CG G C A SI RC++ FSP WS+R
Sbjct: 311 CGAFGLCDSNAGATSICRCVKGFSPASPAEWSMR 344
>01_06_0527 - 30018814-30019638
Length = 274
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -1
Query: 616 SAVLTPQRNDHLCACFGENICMHLLMDAN--FANPHAPRHPQSGLGSDARR*PDGTSCSS 443
SA L P+ + AC+G + +L DAN F + H +G S+ P ++
Sbjct: 69 SAPLDPRVVAAIKACYGLGCDLRILSDANRFFIDTILDHHGLTGYFSEINTNPSAVDAAT 128
Query: 442 CTLISTPSHPAFADREGVEVGV 377
L P H A G +G+
Sbjct: 129 GRLRIAPYHDFHAGPHGCGLGI 150
>04_03_0226 - 12977443-12977895
Length = 150
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = -1
Query: 313 SVTEHTAAGFYDTTRLYLSWRKPWKRTSGRLSWSRGYEHRLVSV-----SRILSPPGMVS 149
SVTE A T R WR+ W+ R SW+ RL G +
Sbjct: 47 SVTEAAVASVLMTWRRGSQWRRTWRGCQRRRSWAWRRRWRLGRADVEPGGGCGGQEGRIH 106
Query: 148 E*SWTCRWSRASD 110
E SWT R A D
Sbjct: 107 EGSWTMREEAAVD 119
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 498 CGCRGACGFAKFASINRCMQMFSPKQAHRWSLRCG 602
CG G C + C++ F+PK W+LR G
Sbjct: 303 CGANGVCDTNNLP-VCSCLRGFTPKSPEAWALRDG 336
>10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340
Length = 644
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 617 TCGAVPGPPQFLTNLIRFGGGSC 685
TCG G P+F TN GGG C
Sbjct: 191 TCGVRLGQPEFATNGSCLGGGCC 213
>12_02_1216 + 27077570-27078313
Length = 247
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = -1
Query: 712 GLDSSPWSVA-RAAAKSDKIRK-------KLRWAWNSSAGSAVLTPQRNDHLCACFGENI 557
GL++ +VA R AAK D+IR+ +LR AW S + R A GEN
Sbjct: 91 GLEAVKTAVAWRLAAKDDEIRRARREMAERLRCAWAVSRAWQSIAVAREGEKAALQGENA 150
Query: 556 CMHLLMD 536
+ + +D
Sbjct: 151 ALRVELD 157
>11_01_0422 + 3246528-3248606
Length = 692
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 501 GCRGACGFAKFASINRC--MQMFSPKQAHRWSLRCGVNTAEPAELFQAHRSFLRILSDLA 674
GC A G A F + RC +QM + +A + R + ++++A R ++
Sbjct: 334 GCDAAVGRAIFVDLARCAMLQMLNFTEAVAMTKRAAEKLFKVLDMYEAVRDAAPVIDAFI 393
Query: 675 AALATDHGDESSP 713
AA +T P
Sbjct: 394 AACSTTDAAADEP 406
>09_06_0196 - 21481662-21481720,21481898-21483245
Length = 468
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 498 CGCRGACGFAKFASINRCMQMFSPKQAHRWS 590
CG G C +++ A C+ F P+ WS
Sbjct: 304 CGPYGYCYYSEVAPTCECLDGFEPRSKEEWS 334
>06_01_1204 + 10397131-10398498
Length = 455
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 176 PAYGDQPMFVASAPAQPSTCSLPWLSPRKIQSCCVVESGRR 298
P + P+ A PA+ S LPWL + +S V G R
Sbjct: 222 PVFAVGPLSPAPIPAKDSGSYLPWLDAQPARSVVYVSFGSR 262
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 300 CSVTLL*DVSRRLPNLATSTAGQR 371
C V L SRR PN+A +T+GQR
Sbjct: 881 CEVYTLLGRSRRFPNMAHATSGQR 904
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 601 PQRNDHLCACFGENICMHLLMDANFANPHAPRHPQSG 491
P+ HLC+ N C+ L ++ A HA H G
Sbjct: 1358 PRGASHLCSLLAGNCCLRLTLEDPTARIHAYIHKDDG 1394
>01_01_0068 + 532786-533139
Length = 117
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 288 PAAVCSVTL-L*DVSRRLPNLATSTAGQRRLTPTSTP 395
P A+ +L L + RRLP+LAT+++G R +S+P
Sbjct: 39 PMAMAGASLPLPSLVRRLPDLATASSGDPREVASSSP 75
>10_02_0095 +
5243703-5243965,5244061-5244173,5244432-5244481,
5244629-5244862,5245394-5245543,5245816-5245836,
5245920-5246087
Length = 332
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 712 GLDSSPWSVARAAAKSDKIRKKLRWAWNSSAGSAVLTPQRN 590
GLD SP+ +A AA K +K+ ++ W + G A P +
Sbjct: 221 GLDLSPYFLAVAAHKEEKLSRQNPIRWVHANGEATGLPSNS 261
>01_06_0302 -
28318910-28318999,28319118-28319210,28319303-28319383,
28319483-28319633,28319716-28319783,28319989-28320143,
28320268-28320326,28320649-28320899
Length = 315
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 63 VIPVFITFLTVKLVKRSLARDHLHVHDHSDTIPGG 167
VIP++I ++V + R H VH+ +D+ PGG
Sbjct: 265 VIPIYIILVSVTTLLHRY-RQHQAVHEATDSEPGG 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,480,559
Number of Sequences: 37544
Number of extensions: 538329
Number of successful extensions: 1933
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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