Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F07
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.7  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 260 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 382
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 433 HSSALPWSEESDRS-TVYRVPTRQAGSGPAGYSGTPAAPS 317
           +S A P+++    S  +   PTRQA +G    SG+P + S
Sbjct: 19  YSGASPYTQRVRPSYELIEAPTRQATNGTGSVSGSPNSSS 58


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 394 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 260
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -1

Query: 586  ALPFPHRSVAVEPGAGGGNTPVRPGPL*VAAPP 488
            A P P  SVAV P       P  P P  VAAPP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPP 1132


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 361 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 278
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,528
Number of Sequences: 5004
Number of extensions: 46755
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)