Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F05
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   148   1e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   148   1e-36

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (358), Expect = 1e-36
 Identities = 79/166 (47%), Positives = 95/166 (57%)
 Frame = -1

Query: 774 KKXXXIMEIQXNGXTXEXKXKWXXKXFGRTFXXXXLCLPQDEMIXCIGVXXGKXYKGXXX 595
           +K   +MEIQ NG +   K +W  + F +T         Q+EMI  IGV  GK  +G   
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTA 231

Query: 594 RWHTKKXPRKTHKVLRKVACIGAWHPFRVSFTVXRXXQKGYXXRXEMNKKIYRIGQGIXK 415
           RW TK+ PRKTH+ LRKVACIGAWHP  V +TV R    GY  R ++N KIYRIG G   
Sbjct: 232 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 414 KDGKVIKNNAXTEYXXXEKSITPMGGFPHYGEVNXXFVMIQGLXHG 277
            D K    NA T++   EK ITPMGGF  YG V   FVM+ G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = -2

Query: 290 GXCMGXKKXIIXXRXFXXVXTKRXALEKINXKFXDTSSKFXHXXFQTPXDKAAFMGTFKK 111
           G   G  K ++  R      T R ALE ++ K+ DT+SKF H  FQTP +   F+GT KK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (358), Expect = 1e-36
 Identities = 79/166 (47%), Positives = 95/166 (57%)
 Frame = -1

Query: 774 KKXXXIMEIQXNGXTXEXKXKWXXKXFGRTFXXXXLCLPQDEMIXCIGVXXGKXYKGXXX 595
           +K   +MEIQ NG +   K +W  + F +T         Q+EMI  IGV  GK  +G   
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTA 231

Query: 594 RWHTKKXPRKTHKVLRKVACIGAWHPFRVSFTVXRXXQKGYXXRXEMNKKIYRIGQGIXK 415
           RW TK+ PRKTH+ LRKVACIGAWHP  V +TV R    GY  R ++N KIYRIG G   
Sbjct: 232 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 414 KDGKVIKNNAXTEYXXXEKSITPMGGFPHYGEVNXXFVMIQGLXHG 277
            D K    NA T++   EK ITPMGGF  YG V   FVM+ G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = -2

Query: 290 GXCMGXKKXIIXXRXFXXVXTKRXALEKINXKFXDTSSKFXHXXFQTPXDKAAFMGTFKK 111
           G   G  K ++  R      T R ALE ++ K+ DT+SKF H  FQTP +   F+GT KK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,414
Number of Sequences: 5004
Number of extensions: 30131
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)