Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F05
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   157   8e-39
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   157   8e-39
11_04_0146 - 14091671-14092357,14092996-14093229                       29   6.0  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  157 bits (382), Expect = 8e-39
 Identities = 82/166 (49%), Positives = 100/166 (60%)
 Frame = -1

Query: 774 KKXXXIMEIQXNGXTXEXKXKWXXKXFGRTFXXXXLCLPQDEMIXCIGVXXGKXYKGXXX 595
           +K   +MEIQ NG T   K  +  K F +      +   +DEMI  IGV  GK Y+G   
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVT 234

Query: 594 RWHTKKXPRKTHKVLRKVACIGAWHPFRVSFTVXRXXQKGYXXRXEMNKKIYRIGQGIXK 415
           RW   + PRKTH+ LRKVACIGAWHP RVS+TV R  Q GY  R EMNKK+Y+IG     
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG----- 289

Query: 414 KDGKVIKNNAXTEYXXXEKSITPMGGFPHYGEVNXXFVMIQGLXHG 277
           K G+   + A TE+   EK ITPMGGFPHYG V   ++MI+G   G
Sbjct: 290 KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 26/52 (50%), Positives = 31/52 (59%)
 Frame = -2

Query: 293 KGXCMGXKKXIIXXRXFXXVXTKRXALEKINXKFXDTSSKFXHXXFQTPXDK 138
           KG C+G KK ++  R      T R ALE+I  KF DTSSKF H  FQT  +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  157 bits (382), Expect = 8e-39
 Identities = 82/166 (49%), Positives = 100/166 (60%)
 Frame = -1

Query: 774 KKXXXIMEIQXNGXTXEXKXKWXXKXFGRTFXXXXLCLPQDEMIXCIGVXXGKXYKGXXX 595
           +K   +MEIQ NG T   K  +  K F +      +   +DEMI  IGV  GK Y+G   
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVT 234

Query: 594 RWHTKKXPRKTHKVLRKVACIGAWHPFRVSFTVXRXXQKGYXXRXEMNKKIYRIGQGIXK 415
           RW   + PRKTH+ LRKVACIGAWHP RVS+TV R  Q GY  R EMNKK+Y+IG     
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG----- 289

Query: 414 KDGKVIKNNAXTEYXXXEKSITPMGGFPHYGEVNXXFVMIQGLXHG 277
           K G+   + A TE+   EK ITPMGGFPHYG V   ++MI+G   G
Sbjct: 290 KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 29/60 (48%), Positives = 34/60 (56%)
 Frame = -2

Query: 293 KGXCMGXKKXIIXXRXFXXVXTKRXALEKINXKFXDTSSKFXHXXFQTPXDKAAFMGTFK 114
           KG C+G KK ++  R      T R ALE+I  KF DTSSKF H  FQT  +K  F G  K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>11_04_0146 - 14091671-14092357,14092996-14093229
          Length = 306

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 618 KXYKGXXXRWHTKKXPRKTHKVLRKVACIGAW 523
           K YK    RWH K+   K  K   KV    +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,355
Number of Sequences: 37544
Number of extensions: 199671
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)