Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F03
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   206   3e-54
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   204   1e-53
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   5e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   3.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   4.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  206 bits (503), Expect = 3e-54
 Identities = 99/152 (65%), Positives = 114/152 (75%)
 Frame = -3

Query: 785 VVAIENPXDVFVISSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLIV 606
           +  IENP DV VISSRP+G RAV KF AHTG T IAGRFTPG FTN I   +RE RL+IV
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIV 127

Query: 605 LDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVPR 426
            DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREV R
Sbjct: 128 TDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLR 187

Query: 425 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
           LRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 188 LRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  204 bits (498), Expect = 1e-53
 Identities = 97/154 (62%), Positives = 114/154 (74%)
 Frame = -3

Query: 785 VVAIENPXDVFVISSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLIV 606
           +  IENP DV V+S+R +G RAV KF AHTG T IAGRFTPG FTN I   +RE RL++V
Sbjct: 67  IATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVV 126

Query: 605 LDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVPR 426
            DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREV R
Sbjct: 127 TDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLR 186

Query: 425 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 324
           +RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 187 VRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -3

Query: 617 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
           L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 467 IGLMWWLLAREVPRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 573 SNGLMVLCRVQYNQETXFTECSLDLVSKSTWCETSRNXRXTGVRGKLXYSTLTEGP 740
           S GL  L R +   E  F +     +S + W  T +     G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,912
Number of Sequences: 5004
Number of extensions: 55001
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)