Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F03
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 204 6e-53
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 201 4e-52
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 4.3
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 28 7.4
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 28 9.8
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 28 9.8
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 28 9.8
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 204 bits (498), Expect = 6e-53
Identities = 92/156 (58%), Positives = 118/156 (75%)
Frame = -3
Query: 785 VVAIENPXDVFVISSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLIV 606
+VAIENP D+ V S+RP+GQRAV KF +TG IAGR TPG FTNQ+Q +F E RLLI+
Sbjct: 69 IVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
Query: 605 LDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVPR 426
DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR V +
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQ 188
Query: 425 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 318
+RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 201 bits (491), Expect = 4e-52
Identities = 90/152 (59%), Positives = 115/152 (75%)
Frame = -3
Query: 785 VVAIENPXDVFVISSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLIV 606
+VAIENP D+ V S+RP+GQRAV KF +TG IAGR TPG FTNQ+Q +F E RLLI+
Sbjct: 69 IVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
Query: 605 LDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVPR 426
DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR V +
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Query: 425 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
+RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR 145
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 461 LMWWLLAREVPRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -2
Query: 789 CCCSHREPR*CVCXFITALRSACCXEVXR--AHRXYAYCGTFHTRCF 655
CCCS R C+ L +A C + R Y C T RCF
Sbjct: 370 CCCSWRVLGLCLSWSCCELDNAVCCKDNRYCCPHDYPVCDTASQRCF 416
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 451 GCWHVKCRGFVVCFPVTSAGMLWLICS-STVTLKKVKRMNNKPRNRLWYQLN 299
G WH K + ++ + V AG W + S V +N PR L Y N
Sbjct: 252 GIWHTKRKSYLKPYLVNGAGSAWTMMSRQFAEYFTVGYDDNLPRTLLLYYTN 303
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 505 TLLSHATPSLPTLLV*CGGCWHVKCRGFVVCF--PVT 401
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 505 TLLSHATPSLPTLLV*CGGCWHVKCRGFVVCF--PVT 401
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 731 GQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLI--VLDPAQDHQPITEASYV 558
G+ + HT T R TP AF + AA E R+ + + ++ EA Y
Sbjct: 260 GENSCWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYR 319
Query: 557 NIPVIALCNTDSPLR 513
+I V + + + P++
Sbjct: 320 HIEVFDMRSPEQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,330
Number of Sequences: 37544
Number of extensions: 394910
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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