Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_F03
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   198   3e-51
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    32   0.54 
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      32   0.54 
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   6.7  
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.9  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.9  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  198 bits (484), Expect = 3e-51
 Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 5/159 (3%)
 Frame = -3

Query: 788 AVVAIENPXDVFVISSRPFGQRAVXKFXAHTGXTXIAGRFTPGAFTNQIQAAFREXRLLI 609
           A+ A+ENP DV V+S+RP+ QRA+ KF AHTG T I GRF+PG  TNQIQ  F+E RLL+
Sbjct: 64  AIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLV 123

Query: 608 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVP 429
           + DP  DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN K   SIGLMWW+LARE+ 
Sbjct: 124 ISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREIL 183

Query: 428 RLRGVLPRDQRW-----DVVVDLFFYRDPEESEKDEQQA 327
            LRG + R   +     +++ DL+FYRDP E+EK+E  A
Sbjct: 184 ILRGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -3

Query: 470 SIGLMWWLLAREVPRLRGVLPRDQRWDVVVD 378
           S GL+  +L +EVP +RG+ P D + DV VD
Sbjct: 562 SKGLVLQILKKEVPEMRGMNPIDSQLDVPVD 592


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -3

Query: 470 SIGLMWWLLAREVPRLRGVLPRDQRWDVVVD 378
           S GL+  +L +EVP +RG+ P D + DV VD
Sbjct: 562 SKGLVLQILKKEVPEMRGMNPIDSQLDVPVD 592


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 564 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWSD 457
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 216 CCTRCSSCFWSTPCSRRMVCP 154
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 670  SHQVL-LLTRSKLHSVNXVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 518
            SH+V+  + + +LHS+N  + LYW L + +  +     S F+ +LC     H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 670  SHQVL-LLTRSKLHSVNXVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 518
            SH+V+  + + +LHS+N  + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 670  SHQVL-LLTRSKLHSVNXVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 518
            SH+V+  + + +LHS+N  + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 670  SHQVL-LLTRSKLHSVNXVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 518
            SH+V+  + + +LHS+N  + LYW L + +  +     S F+ +LC     H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 409 GSTPRSLGTSRANNHHIRPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASV 576
           GS P   G + A+++    + W D    GI  +   +GE++   A T +L Y   V
Sbjct: 520 GSVPHVFGLAIADDY----LYWTDWTYRGILRANKHNGENITVLAQTALLPYSLKV 571


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 409 GSTPRSLGTSRANNHHIRPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASV 576
           GS P   G + A+++    + W D    GI  +   +GE++   A T +L Y   V
Sbjct: 520 GSVPHVFGLAIADDY----LYWTDWTYRGILRANKHNGENITVLAQTALLPYSLKV 571


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 167  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 262
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 536 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 432
           CNTD+  R +     CNT   + +G+ + L+AR +
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSL 80


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 485 TKSSHSIGLMWWLLA 441
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 167  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 262
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,035
Number of Sequences: 27780
Number of extensions: 333120
Number of successful extensions: 918
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)