Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_F02
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 156 3e-39
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 156 3e-39
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 2.3
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 3.0
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.3
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.3
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 156 bits (379), Expect = 3e-39
Identities = 93/222 (41%), Positives = 125/222 (56%)
Frame = -2
Query: 772 QKKXHIXGIQXXGVPSRTK*NGPENIWRNXIPVDSVFAQDEMIDCIGVTQGAKDTKVSLL 593
QKK H+ IQ G K + + + S F Q+EMID IGVT+G + +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 592 VGTQRSYPVRHTRXLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 413
GT+R P + R L K+ + + + R + T+ L+ I++
Sbjct: 233 WGTKR-LPRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYR 284
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 233
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 285 IGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLT 344
Query: 232 HTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKE 107
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK+
Sbjct: 345 HTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 125 bits (301), Expect = 8e-30
Identities = 60/109 (55%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -1
Query: 734 GTIEDKVKWAREHLEKPYPCRFCVCPR*ND*LHWCH-PRGKGYKGVTSRWHTKKLPRKTH 558
G++ DKV+WAREH EK + N+ + RGKG +G T+RW TK+LPRKTH
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTF--EQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 557 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 411
+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 156 bits (379), Expect = 3e-39
Identities = 93/222 (41%), Positives = 125/222 (56%)
Frame = -2
Query: 772 QKKXHIXGIQXXGVPSRTK*NGPENIWRNXIPVDSVFAQDEMIDCIGVTQGAKDTKVSLL 593
QKK H+ IQ G K + + + S F Q+EMID IGVT+G + +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 592 VGTQRSYPVRHTRXLGKLPALELGILLGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 413
GT+R P + R L K+ + + + R + T+ L+ I++
Sbjct: 233 WGTKR-LPRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGYMHRTQ----LNSKIYR 284
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRV 233
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 285 IGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLT 344
Query: 232 HTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKE 107
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK+
Sbjct: 345 HTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 125 bits (301), Expect = 8e-30
Identities = 60/109 (55%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -1
Query: 734 GTIEDKVKWAREHLEKPYPCRFCVCPR*ND*LHWCH-PRGKGYKGVTSRWHTKKLPRKTH 558
G++ DKV+WAREH EK + N+ + RGKG +G T+RW TK+LPRKTH
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTF--EQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243
Query: 557 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 411
+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 128 HGYTQEGAYXRRSCGYHNPS 69
HGY+ A R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 492 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 346
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 468 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 328
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 524 KLQCRQLS*XPCVSYGVASLCANEK*HLCILCPLGDTN 637
+L RQLS V+ G+ LC + +C+ P D++
Sbjct: 67 RLNDRQLSCVESVTNGIGLLCLKQADQVCLFTPTVDSH 104
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 375 SVDALFLITLPSFLWIPW 428
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 575 ASLCANEK*HLCILCPLGDTN-AVNHFI 655
A+ C N HL P DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,981
Number of Sequences: 5004
Number of extensions: 67445
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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