Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E23
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 108 1e-24
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 104 2e-23
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.26
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.45
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 28 1.8
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 3.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 5.6
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 108 bits (259), Expect = 1e-24
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = -2
Query: 579 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 400
+AS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197
Query: 399 DVVVDLFFYRDP 364
DV+ DL+FYRDP
Sbjct: 198 DVMPDLYFYRDP 209
Score = 47.2 bits (107), Expect = 3e-06
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 742 GQXAXXXFPXXXGXTPIAGRFTPGAFXXPDSKLHFREPXLLIVLDPAQDHQPITE-SFI 569
G A F G T IAGRFTPG F ++ +REP L++V DP D Q I E SF+
Sbjct: 85 GHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLIVVTDPRADAQAIKEASFV 142
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 104 bits (249), Expect = 2e-23
Identities = 48/72 (66%), Positives = 57/72 (79%)
Frame = -2
Query: 579 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 400
+AS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198
Query: 399 DVVVDLFFYRDP 364
+V+ DL+FYRDP
Sbjct: 199 EVMPDLYFYRDP 210
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -1
Query: 784 EXPXXXLXFXXGPXGQXAXXXFPXXXGXTPIAGRFTPGAFXXPDSKLHFREPXLLIVLDP 605
E P P G A F G T IAGRFTPG F ++ +REP L+IV DP
Sbjct: 72 ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLIIVTDP 130
Query: 604 AQDHQPITE-SFI 569
D Q I E SF+
Sbjct: 131 RADAQAIKEASFV 143
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 582 LKASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 445
L+A ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 196 LEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 359 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 478
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 428 VVCFPVTSAGMLWLICSSTVTPEESEKD 345
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 679 TPGAFXXPDSKLHFREPXLLIVLDPAQDHQPITESFICQHSCDCFVQHRLPTKICGHCYP 500
T A+ S+ HFRE L + PA D T++ + V +LP+ H P
Sbjct: 245 TKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIP 304
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 552 IALCNTDSPLRFVDIAIPCNTKSSHSI 472
+ LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 474 IGLMWWLLAREVLRLRGVLPRDQRWD 397
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 536 VLHKAITGMLTYEAFSNGLMVLCRVQYNQETRFTEMQLXIW 658
V+H A G+LTY + G + + +N T+ +E + ++
Sbjct: 345 VIHHASRGILTYVRVNEGTLSRGMMMFNPRTKKSERAIRLY 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,677
Number of Sequences: 5004
Number of extensions: 47635
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -