Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_E23
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.84 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.84 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 392 TTSQRWSRGSTPRSLSTSRANNHHIKP 472
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 392 TTSQRWSRGSTPRSLSTSRANNHHIKP 472
           T +Q WSRG+T  SL  S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 69  CINTLHWLIILHES 28
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 69  CINTLHWLIILHES 28
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 667 FXXPDSKLHFREPXLLIVLDPAQDHQPITESFICQHS 557
           F     K  F  P   +V DP  D + +++  IC+ S
Sbjct: 193 FLEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLS 229


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 667 FXXPDSKLHFREPXLLIVLDPAQDHQPITESFICQHS 557
           F     K  F  P   +V DP  D + +++  IC+ S
Sbjct: 193 FLEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLS 229


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -3

Query: 356 SEKDEQQAKEQXXXXXXXXXXXXVHEDWNETLEPVASW 243
           +++ +QQ ++Q              + W    EP ASW
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,046
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)