Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_E14
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   1.6  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   2.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   8.4  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   8.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   8.4  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 80  STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKXNPIASISAIQMGFDVASRV 247
           ST  R  R    + SE  HR    P LR R +R+    P+A     +M  D +S+V
Sbjct: 125 STRLRNRRSQDEEESEEEHR----PILRERTSRINYSVPLAFPPVDEMDGDPSSQV 176


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +1

Query: 193 PDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRH 372
           P+   ++DP  L  R  + EC T++V ++ LE   S+   ++     S R  +A+    +
Sbjct: 89  PNITSIKDPRPLSDRRYQQECATQVV-NYLLESGFSQPLGLNNRFMPSTREFAAIFKHLY 147

Query: 373 NPADGSFXXXXXXXXXXTKCPKLRFLSY 456
           N  D +F          T C  L+ L+Y
Sbjct: 148 NKLDPNFRFGARYEEDVTTC--LKALNY 173


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 476 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 327
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 402 GRSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLTQLTFPFDGXNNPTL 569
           G      N   +  + +V   +   T S Q    NLSH+ L  L F ++  N+P +
Sbjct: 178 GNGKPLSNYEGQLGLRIVYWKLLDKTYSTQIFMDNLSHESLPHLLFGYNLLNSPPI 233


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 114 VDDFRSWRGVVLGRAASCCDLLRLS 40
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 404 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 279
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,088
Number of Sequences: 5004
Number of extensions: 49098
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)