Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_E12
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 623 HFHQSPDAVLEGVRAGVKPPLSSEAPSAYLTPSSL 519
           H ++    +L+G  AGV+P  +S  P A +   SL
Sbjct: 5   HEYRLTKYLLDGYDAGVRPAENSSQPLAVVFGLSL 39


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 710 KPPFPXDFGYINPIIKSPIPYTNHPRLNI 624
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 70  KPPGPKDLVYLEP---SPPFCEKNPKLGI 95


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 710 KPPFPXDFGYINPIIKSPIPYTNHPRLNI 624
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 71  KPPGPKDLVYLEP---SPPFCEKNPKLGI 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,395
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)