Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E09
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 159 2e-39
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 157 1e-38
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
11_01_0018 + 133791-134081 28 7.4
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 28 9.8
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 159 bits (387), Expect = 2e-39
Identities = 69/116 (59%), Positives = 90/116 (77%)
Frame = -3
Query: 666 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 487
PG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 486 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 319
K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 169 NKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -1
Query: 788 VVAIENPXXVXVXSSRPFGQRAVLKFAAHTRCYAYCG 678
+VAIENP + V S+RP+GQRAVLKFA +T +A G
Sbjct: 69 IVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 157 bits (380), Expect = 1e-38
Identities = 67/112 (59%), Positives = 87/112 (77%)
Frame = -3
Query: 666 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 487
PG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N
Sbjct: 109 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPAN 168
Query: 486 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 331
K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 169 NKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -1
Query: 788 VVAIENPXXVXVXSSRPFGQRAVLKFAAHTRCYAYCG 678
+VAIENP + V S+RP+GQRAVLKFA +T +A G
Sbjct: 69 IVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 211 TRCSSCFWSTPCSRRMVCPGTR 146
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 462 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 373
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>11_01_0018 + 133791-134081
Length = 96
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 623 GSRNAAWIWLV-KAPGCETSRNXRSTGCARQT 715
G R WIWLV + G E +R R G R+T
Sbjct: 15 GERRWGWIWLVAEEAGKEAARRGRGEGGKRKT 46
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 579 WVDGLVQGPIQSRDEVHGMQLGSG**KHLXVKRPAIXVAPGVRGKLQYSTLTEG 740
W GLV G + ++ GM+L + KRP + G G+ +Y+ + G
Sbjct: 362 WWSGLVYGMLMAKSTYEGMKLAN------PTKRPFVLTRAGFIGQQRYAAMWTG 409
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 361 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 477
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,349,535
Number of Sequences: 37544
Number of extensions: 414390
Number of successful extensions: 1150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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