Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_E07
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   3.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   6.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/88 (26%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
 Frame = +1

Query: 349  PAXXXXGXPXPPXXXXXRPPXXAXXXXXXVX-PSXXXPPXLXPLXXLXXXPLXSCVASXP 525
            P     G P  P      PP         V  PS   PP   P       P  S  A   
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP-SGAPPVPKPSVAAPPV 1171

Query: 526  XCPXPPXPPRPPXQXXXPPXXXXXLXPP 609
              P    PP P      PP       PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +1

Query: 403 PPXXAXXXXXXVXPSXXXPPXLXPLXXLXXXPLXSCVASXPXCPXPPXPPRP 558
           PP         V PS   P    P       PL     + P  P PP P  P
Sbjct: 461 PPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAP 512


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/81 (23%), Positives = 20/81 (24%)
 Frame = +1

Query: 442 PSXXXPPXLXPLXXLXXXPLXSCVASXPXCPXPPXPPRPPXQXXXPPXXXXXLXPPXC*X 621
           PS   PP       +   P    V   P  P  P PP  P     P        P     
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661

Query: 622 PXXXHVXLAXXXPSXRRXPXP 684
           P       A   P     P P
Sbjct: 662 PSVPQPPAAPVVPEVPSVPQP 682


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/54 (25%), Positives = 16/54 (29%)
 Frame = +2

Query: 581 PXXXRVSHPPXAXPRXXXTYXXPXXPRLXAGXPXXXYXXXRSXPPSXXXPXPSP 742
           P    +  P  A P     Y  P  P +  G P   Y      P       PSP
Sbjct: 571 PMIPSIVLPNSAMPSAMPMYPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVAPSP 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,967
Number of Sequences: 5004
Number of extensions: 18345
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)