Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E07
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 36 0.024
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 36 0.024
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 36 0.024
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 34 0.13
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.13
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.39
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.39
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.39
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 30 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 30 2.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.7
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 4.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 4.8
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.4
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 24 8.6
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 24 8.7
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.024
Identities = 28/109 (25%), Positives = 35/109 (32%)
Frame = -2
Query: 679 GGXCXXTGXXXXAVRGGXXGXSXRGVXDXXXXXGXXXXGXGXEXGXGGXGXRXXRPRKXX 500
GG G A RGG G G G G + G G G + ++
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 499 GGXXXXGIGGXGXVXXXXRXXXXTXXXXRAXGXGGGXXXXGXGXRXXGW 353
GG G GG G + + G GGG G G + GW
Sbjct: 281 GGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGG--WGGQGQQQGGW 327
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.024
Identities = 28/109 (25%), Positives = 35/109 (32%)
Frame = -2
Query: 679 GGXCXXTGXXXXAVRGGXXGXSXRGVXDXXXXXGXXXXGXGXEXGXGGXGXRXXRPRKXX 500
GG G A RGG G G G G + G G G + ++
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 242
Query: 499 GGXXXXGIGGXGXVXXXXRXXXXTXXXXRAXGXGGGXXXXGXGXRXXGW 353
GG G GG G + + G GGG G G + GW
Sbjct: 243 GGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGG--WGGQGQQQGGW 289
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.024
Identities = 28/109 (25%), Positives = 35/109 (32%)
Frame = -2
Query: 679 GGXCXXTGXXXXAVRGGXXGXSXRGVXDXXXXXGXXXXGXGXEXGXGGXGXRXXRPRKXX 500
GG G A RGG G G G G + G G G + ++
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 499 GGXXXXGIGGXGXVXXXXRXXXXTXXXXRAXGXGGGXXXXGXGXRXXGW 353
GG G GG G + + G GGG G G + GW
Sbjct: 281 GGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGG--WGGQGQQQGGW 327
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/77 (28%), Positives = 22/77 (28%)
Frame = -1
Query: 608 GGXRXXXXXGGXXXWXGGRGGXGGXGXXGXEATQEXRGXXXXWXRGXRXGGXXXEGXTXX 429
GG GG W GGRGG G G G RG GG G
Sbjct: 50 GGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGG 109
Query: 428 XXXXAXXGGRXXXXXGG 378
GG GG
Sbjct: 110 GRGGGGGGGGGRGGGGG 126
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Frame = +3
Query: 357 PXXRXPXPXXXXPPPXPXARXXXXVXXXXLXXXXTXPXPPXPXXXXPPXLLRGLXXRXPX 536
P P PPP P A T PP P PP G P
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPP 299
Query: 537 PPXPXSXPXPXXXXPXXXXXSXTPLXL-XPXXPPR 638
PP P P P S P P PPR
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP P PP G P PP P P P P P P T
Sbjct: 256 PPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 312
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 313 PPPQAGGSPPP 323
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +3
Query: 465 PXPPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTA 644
P PP P PP G P PP S P P P P P PP
Sbjct: 237 PPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSP------PPPPTGSPPPPPAGG 287
Query: 645 XXXXPVXXQXPPP 683
P PPP
Sbjct: 288 SPPPPRAGSPPPP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Frame = +3
Query: 357 PXXRXPXPXXXXPPPXPXARXXXXVXXXXLXXXXTXPXPPXPXXXXPPXLLRGLXXRXPX 536
P P PPP P A T PP P PP G P
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPP 320
Query: 537 PPXPXSXPXPXXXXPXXXXXSXTPLXL-XPXXPPR 638
PP P P P S P P PPR
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP P PP G P PP P P P P P P T
Sbjct: 277 PPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 333
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 334 PPPQAGGSPPP 344
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +3
Query: 465 PXPPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTA 644
P PP P PP G P PP S P P P P P PP
Sbjct: 258 PPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSP------PPPPTGSPPPPPAGG 308
Query: 645 XXXXPVXXQXPPP 683
P PPP
Sbjct: 309 SPPPPRAGSPPPP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Frame = +3
Query: 357 PXXRXPXPXXXXPPPXPXARXXXXVXXXXLXXXXTXPXPPXPXXXXPPXLLRGLXXRXPX 536
P P PPP P A T PP P PP G P
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPP 305
Query: 537 PPXPXSXPXPXXXXPXXXXXSXTPLXL-XPXXPPR 638
PP P P P S P P PPR
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP P PP G P PP P P P P P P T
Sbjct: 262 PPPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 318
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 319 PPPQAGGSPPP 329
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +3
Query: 465 PXPPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTA 644
P PP P PP G P PP S P P P P P PP
Sbjct: 243 PPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSP------PPPPTGSPPPPPAGG 293
Query: 645 XXXXPVXXQXPPP 683
P PPP
Sbjct: 294 SPPPPRAGSPPPP 306
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 442 PSXXXPPXLXPLXXLXXXPLXSCVASXPXCPXPPXPPRPPXQXXXPP 582
P PP L P P C P CP PP PP PP PP
Sbjct: 35 PPMCAPPPL-PCPPPPICPPQFC-PPPPMCPPPPPPPPPPMCPPPPP 79
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Frame = +1
Query: 508 CVASXPXCPXPPXP--PRPPXQXXXPPXXXXXLXPP 609
C P CP PP P PP PP PP
Sbjct: 23 CSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPP 58
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.39
Identities = 28/110 (25%), Positives = 35/110 (31%), Gaps = 1/110 (0%)
Frame = -2
Query: 679 GGXCXXTGXXXXAVRGGXXG-XSXRGVXDXXXXXGXXXXGXGXEXGXGGXGXRXXRPRKX 503
GG G A RGG G G G G + G G G + ++
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 242
Query: 502 XGGXXXXGIGGXGXVXXXXRXXXXTXXXXRAXGXGGGXXXXGXGXRXXGW 353
GG G GG G + + G GGG G G + GW
Sbjct: 243 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGG--WGGQGQQQGGW 290
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.39
Identities = 28/110 (25%), Positives = 35/110 (31%), Gaps = 1/110 (0%)
Frame = -2
Query: 679 GGXCXXTGXXXXAVRGGXXG-XSXRGVXDXXXXXGXXXXGXGXEXGXGGXGXRXXRPRKX 503
GG G A RGG G G G G + G G G + ++
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 280
Query: 502 XGGXXXXGIGGXGXVXXXXRXXXXTXXXXRAXGXGGGXXXXGXGXRXXGW 353
GG G GG G + + G GGG G G + GW
Sbjct: 281 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGG--WGGQGQQQGGW 328
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 623 GXQXXGGXRXXXXXGGXXXWXGGRGGXGGXGXXG 522
G GG GG W GGRGG GG G G
Sbjct: 694 GGNGGGGWGNNDPWGGSR-WGGGRGGWGGGGWGG 726
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/96 (26%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Frame = +3
Query: 465 PXPPXPXXXXPPXL--LRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPR 638
P PP PP + G+ R P PP P P P + P PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP- 322
Query: 639 TAXXXXPVXXQXPPPXXXXXFAXXRXLXXXPXPPRP 746
+ P PPP R P PP P
Sbjct: 323 -SRFGPPGMGGMPPPPP----PGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/96 (26%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Frame = +3
Query: 465 PXPPXPXXXXPPXL--LRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPR 638
P PP PP + G+ R P PP P P P + P PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP- 332
Query: 639 TAXXXXPVXXQXPPPXXXXXFAXXRXLXXXPXPPRP 746
+ P PPP R P PP P
Sbjct: 333 -SRFGPPGMGGMPPPPP----PGMRYPGGMPPPPPP 363
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 523 PXCPXPPXPPRPPXQXXXPPXXXXXLXPP 609
P P PP P RPP PP PP
Sbjct: 143 PHFPGPPGPHRPPEHYPGPPRPQAPAAPP 171
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/71 (29%), Positives = 24/71 (33%)
Frame = +3
Query: 336 RXXXARXPXXRXPXPXXXXPPPXPXARXXXXVXXXXLXXXXTXPXPPXPXXXXPPXLLRG 515
R ++ P P P PPP P A P PP P PP L +
Sbjct: 523 RRSTSKDPPRPAPPPVSSIPPPPPIA-------GLLAANGTNVPIPPPP----PPPLPQN 571
Query: 516 LXXRXPXPPXP 548
L P PP P
Sbjct: 572 LSGAPPPPPPP 582
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +1
Query: 436 VXPSXXXPPXLX---PLXXLXXXPLXSC-VASXPXCPXPPXPPRPPXQXXXPP 582
+ PS PP + P+ PL VA P CP PP PPR P P
Sbjct: 229 ISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCP-PPLPPRTPSMKLPDP 280
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +2
Query: 311 APERRGWRAAXPC-----PPXXXXXSXPXXXAPXXXPPRXPXPXGXXSXP--PXXXHPXX 469
AP G A+ PC PP P A PP P P G P P P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 470 PP 475
PP
Sbjct: 187 PP 188
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +2
Query: 311 APERRGWRAAXPC-----PPXXXXXSXPXXXAPXXXPPRXPXPXGXXSXP--PXXXHPXX 469
AP G A+ PC PP P A PP P P G P P P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 470 PP 475
PP
Sbjct: 187 PP 188
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +2
Query: 311 APERRGWRAAXPCPPXXXXXSXPXXXAPXXXPPRXPXPXGXXSXPPXXXHPXXPP 475
AP+ A+ P PP P PPR P S PP P PP
Sbjct: 112 APQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP-PMTPP 165
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/71 (25%), Positives = 19/71 (26%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP PP L + P PP P P P P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 767 GCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/71 (25%), Positives = 19/71 (26%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP PP L + P PP P P P P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 767 GCPPPPPPPPP 777
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +2
Query: 311 APERRGWRAAXPC-----PPXXXXXSXPXXXAPXXXPPRXPXPXGXXSXP--PXXXHPXX 469
AP G A+ PC PP P A PP P P G P P P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 470 PP 475
PP
Sbjct: 187 PP 188
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +1
Query: 436 VXPSXXXPPXLX---PLXXLXXXPLXSC-VASXPXCPXPPXPPRPPXQXXXPP 582
+ PS PP + P+ PL VA P CP PP PPR P P
Sbjct: 229 ISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPMPRCP-PPLPPRTPSMKLPDP 280
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +2
Query: 311 APERRGWRAAXPC-----PPXXXXXSXPXXXAPXXXPPRXPXPXGXXSXP--PXXXHPXX 469
AP G A+ PC PP P A PP P P G P P P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG 186
Query: 470 PP 475
PP
Sbjct: 187 PP 188
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/71 (25%), Positives = 19/71 (26%)
Frame = +3
Query: 471 PPXPXXXXPPXLLRGLXXRXPXPPXPXSXPXPXXXXPXXXXXSXTPLXLXPXXPPRTAXX 650
PP PP L + P PP P P P P PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 651 XXPVXXQXPPP 683
P PPP
Sbjct: 350 GCPPPPPPPPP 360
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/79 (22%), Positives = 23/79 (29%)
Frame = -1
Query: 608 GGXRXXXXXGGXXXWXGGRGGXGGXGXXGXEATQEXRGXXXXWXRGXRXGGXXXEGXTXX 429
GG G W G +GG G G + G G G +G +
Sbjct: 121 GGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQG 180
Query: 428 XXXXAXXGGRXXXXXGGXG 372
GG+ GG G
Sbjct: 181 GWGGQNGGGQGGNQGGGGG 199
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/51 (29%), Positives = 18/51 (35%)
Frame = +1
Query: 457 PPXLXPLXXLXXXPLXSCVASXPXCPXPPXPPRPPXQXXXPPXXXXXLXPP 609
PP + P+ L P + P P PP PP Q P PP
Sbjct: 695 PPGVPPMFNLNAPPPPG-IPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPP 744
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 538 PPXPPRPPXQXXXPP 582
PP PP PP PP
Sbjct: 795 PPPPPLPPISSGAPP 809
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 532 PXPPXPPRPP 561
P PP PP PP
Sbjct: 765 PPPPPPPPPP 774
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 538 PPXPPRPPXQXXXPP 582
PP PP PP PP
Sbjct: 795 PPPPPLPPISSGAPP 809
Score = 22.2 bits (45), Expect(2) = 8.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 532 PXPPXPPRPP 561
P PP PP PP
Sbjct: 765 PPPPPPPPPP 774
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,096,503
Number of Sequences: 27780
Number of extensions: 173840
Number of successful extensions: 1300
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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