Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E04
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 27 4.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 5.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 7.2
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 9.5
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.5
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.5
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 106 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 234
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 261 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 166
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 360 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 181
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 180 LSASIQASLPSSEIYRQL 127
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 495 IFK*MMNHKLRALLVVIPRILRSPPLTHPL 406
IF + H R L V+P++LRS L+H L
Sbjct: 752 IFIRSIKHVFRNFLAVVPQVLRSHLLSHLL 781
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 700 AXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 521
A T T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 520 MXKGVSP 500
K V P
Sbjct: 741 YAKTVIP 747
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 148 LRDLPPVGRSSPCFFRLLWSLRKVLIPYSSQFW 50
L++L +G SPC RL L V++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 661 FHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 485
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 484 NDESQA 467
+S +
Sbjct: 196 LQKSHS 201
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 706 SPAXSGTSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKP 572
S +G+S RS+ H PTTPD ++ + L P +P KP
Sbjct: 278 STTTTGSSYRSAESS-HAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 745 IXMAVSPLCIKPXSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPL 566
+ V+P + + + S+ S+ H+ T+ ++TSI P T + PP
Sbjct: 30 VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSH--NSTTTTVPPT 87
Query: 565 SSEAPSAYLTP-SSLGMXKGVSPPYFQVN 482
+S + + P +SL +PP VN
Sbjct: 88 TSMNTTTTVPPTTSLNTTTTTAPPTTHVN 116
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 336 LVTHKELALKVSSIIGTRVYVFDPSCY 256
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/77 (24%), Positives = 28/77 (36%)
Frame = -1
Query: 715 KPXSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 536
+P S A + + P P P + + NP TP+ P + A + L
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303
Query: 535 PSSLGMXKGVSPPYFQV 485
P G+ G PY V
Sbjct: 304 P---GLKNGSDYPYLSV 317
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.5
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -1
Query: 706 SPAXSGTSTRSS-NPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSA 545
SP S S +P P+TP + SI+P TP Y + A L PLS + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343
Query: 544 YL 539
YL
Sbjct: 344 YL 345
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 725 LMHQAXLPCDXGYINPIIKSPIPYTNHP 642
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 121 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 222
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,759
Number of Sequences: 5004
Number of extensions: 55401
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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