Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E04
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 0.96
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 0.96
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 31 1.3
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 5.1
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 28 8.9
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 28 8.9
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.9
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.9
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 712 PXSPAXSGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 542
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 541 LTPSSLGMXKGVSPPY 494
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 712 PXSPAXSGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 542
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 541 LTPSSLGMXKGVSPPY 494
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -1
Query: 730 SPLC---IKPXSPAXSGTSTRSSN--PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPL 566
SP C +K PA G+ + + P T TP+LT++++ P+T K + P
Sbjct: 148 SPPCSDDVKIFCPATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTT 207
Query: 565 SSEAPS 548
+++ P+
Sbjct: 208 TTKLPT 213
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -1
Query: 706 SPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 527
+P + T+T +NP TPTT TS N ++P+ + + AP +P++
Sbjct: 491 TPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPTT 549
Query: 526 LGMXKGVSPP 497
S P
Sbjct: 550 TPTHTTASQP 559
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 667 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 491
PR TP L + I+P+ +F P + PP +P A P++L S P
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584
Query: 490 QVNDESQASRLISR 449
V ++ ++R
Sbjct: 585 YVPNQESFDESVNR 598
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 667 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 491
PR TP L + I+P+ +F P + PP +P A P++L S P
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584
Query: 490 QVNDESQASRLISR 449
V ++ ++R
Sbjct: 585 YVPNQESFDESVNR 598
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 706 SPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLTP 533
+P + T+T +NP TPTT + +I +P P + P S+ AP+A + P
Sbjct: 491 TPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNP 548
Query: 532 SS 527
+S
Sbjct: 549 TS 550
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 571 PLSSEAPSAYLTPSSLGMXKGVSPP 497
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 571 PLSSEAPSAYLTPSSLGMXKGVSPP 497
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,468
Number of Sequences: 27780
Number of extensions: 312334
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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