Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_E01
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.52
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 0.91
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 2.1
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 2.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.9
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 8.5
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 8.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 564
P T+ T + PP+ P ++ TST T T + P T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 565 P 567
P
Sbjct: 1703 P 1703
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Frame = +1
Query: 373 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 525
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 526 RNPNTAAS 549
P T++S
Sbjct: 381 STPITSSS 388
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 510 NLHPPAEPEHRRIARHERTGRL 575
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 108 VNVCSRASVCYKISGFGFPFMFHS 37
+++C ++C K+ G F + FHS
Sbjct: 1307 LSICYTINICVKVYGLSFYYFFHS 1330
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 655 KQANKKASKFPWGRKIDTXEVVVTCKIRRPVRS 557
K N+ + +FP+ KI TCK +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 372 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 551
T T S ++ + S S + H + +E S H+H HR++ EP ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 552 RHER 563
RH R
Sbjct: 164 RHHR 167
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 356 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 499
TM + ++K RKL+ HL + L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 343 KTFYHHANFLPQQIL 387
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 445 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 564
P L +PT+ Q R GK + NP + SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 358 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 474
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,441
Number of Sequences: 5004
Number of extensions: 57957
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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