Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D23
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   4.9  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   4.9  
01_06_0581 - 30386018-30386440                                         29   4.9  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    28   8.5  
04_03_0904 + 20717005-20718087                                         28   8.5  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 540 PXASRXRXXXPXXPRA*PXAPXPAXPAXXPXPTPYPPKK 656
           P  +R R   P  P      P P+ P   P P P PP +
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPR 166


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 593 TGPXPGXPGXVTEXHPLSPKKXXXPNXXPRRXRSP 697
           T P P   G      P SP +   P+  PRR RSP
Sbjct: 293 TAPSPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSP 327


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 SGVRSQVLERLEMRLRSGGGGARRQ 346
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 579 PRA*PXAPXPAXPAXXPXPTPYPPK 653
           P A P  P P  P   P P P PP+
Sbjct: 53  PTAPPPKPSPTPPPASPPPAPTPPQ 77


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
 Frame = +3

Query: 579 PRA*PXAPXPAXPAXXP-----XPTPYPPKKXXXXXXXHAAXVPXXAXGXXLXPQHXXTD 743
           P   P  P P  PA  P      PTP PPK             P         P +    
Sbjct: 91  PTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQP 150

Query: 744 SLXXPXTXXPEP 779
               P T  P+P
Sbjct: 151 KPTPPPTYKPQP 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,938
Number of Sequences: 37544
Number of extensions: 212490
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)