Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_D22
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 0.001
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.68
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.68
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +2
Query: 689 PPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPP-XPXXPXPXSGXXXHPXXXXPXX 865
PP +P PPS PP P PP PP P P +G P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 866 XXPSXPTPXP 895
P P P P
Sbjct: 475 APPPAPAPAP 484
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +2
Query: 671 PXPXTIPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXPXXP 814
P P +IP P P S S PP PP +PP P P
Sbjct: 231 PIPPSIPSSRPPERVP-SLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/84 (26%), Positives = 22/84 (26%), Gaps = 9/84 (10%)
Frame = +2
Query: 665 PXPXPXTIPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPP--------NPPXPXXPXP 820
P P P PP PP P PPP NPP P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 821 -XSGXXXHPXXXXPXXXXPSXPTP 889
S P P PTP
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTP 420
Score = 27.5 bits (58), Expect = 2.7
Identities = 25/97 (25%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Frame = +3
Query: 615 PXPXXXSXXCPXXXPXSPXQXXXXSPPX---IPXTXXPPXXLSPXPPKXXPXXXXXXWXX 785
P P P P PP P T P LS P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 786 RLTPPXPXXXPPAPGXXXTPPVXXPXXXPPXAPRPXP 896
R P P + TPPV P PP AP P
Sbjct: 398 RSAPALPPLGNAS--RTSTPPVPTPPSLPPSAPPSLP 432
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Frame = +3
Query: 645 PXXXPXSPXQXXXXSPPXIPXTXXPPXXLSPXPPKXXPXXXXXXWXXRLTPPXPXX---X 815
P P +P +PP +P L P P P PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP----AAPPLPPAAPAP 476
Query: 816 PPAPGXXXTPPV 851
PPAP PV
Sbjct: 477 PPAPAPAPAAPV 488
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.010
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Frame = +3
Query: 615 PXPXXXSXXCPXXXPXS---PXQXXXXSPPXIPXTXXPPXXLSPXPPKXXPXXXXXXWXX 785
P P S P P + P +PP T PP S P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
Query: 786 RLTPPXPXXXPPAPGXXXTPPVXXPXXXPPXAPRP 890
+ P P PP P PPV P P P+P
Sbjct: 1073 IPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 33.1 bits (72), Expect = 0.055
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Frame = +3
Query: 657 PXSPXQXXXXSPPXIPXTXXPPXXL--SPXPPKXXPXXXXXXWXXRLTPPXPXXXPPAPG 830
P +P + P P PP S PP P P P PP P
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPI------PVPSTAPPVPI 1045
Query: 831 XXXTPPVXXPXXXPPXAPRPXP 896
TPPV P AP P P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVP 1067
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Frame = +2
Query: 665 PXPXPXT-IPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXPXXPXPXSGXXXH 841
P P P + IPP P P PP P PP PP P +
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVP---PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 842 PXXXXPXXXXPSXPTP 889
P P P P P
Sbjct: 1227 PPVPVPTAKAPPVPAP 1242
Score = 30.3 bits (65), Expect = 0.39
Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 665 PXPXPXT-IPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXPXXPXPXSG-XXX 838
P P P + IP +P PP + P A P P+ P P P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Query: 839 HPXXXXPXXXXPSXPTPXP 895
P P PS P P
Sbjct: 1125 KPSVAAPPVPVPSGAPPVP 1143
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/92 (22%), Positives = 24/92 (26%)
Frame = +3
Query: 615 PXPXXXSXXCPXXXPXSPXQXXXXSPPXIPXTXXPPXXLSPXPPKXXPXXXXXXWXXRLT 794
P P + P P + P +P P P P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV--PKPSVAAPPVPAPSSGIPPV 1181
Query: 795 PPXPXXXPPAPGXXXTPPVXXPXXXPPXAPRP 890
P PP P PPV P P P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.5 bits (63), Expect = 0.68
Identities = 24/87 (27%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Frame = +3
Query: 645 PXXXPXSPXQXXXXSPPXIPXTXXPPXXL-SPXPPKXXPXXXXXXWXXRL-TPPXPXXX- 815
P P P P P PP S PP P PP P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 816 --PPAPGXXXTPPVXXPXXXPPXAPRP 890
PP P PPV P P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/80 (25%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Frame = +2
Query: 665 PXPXPXTIPPXXSPXXXPP-----SXSXXXPPKXXXXXPXAXXXPPPNPPXPXXPXPXSG 829
P P P T PP P PP S + PP P P+ P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 830 XXXHPXXXXPXXXXPSXPTP 889
P P PS P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVP 1112
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/81 (23%), Positives = 26/81 (32%)
Frame = +1
Query: 649 RVXPFPXPXXXNXPPXXFPXXXXPLXVXXXSPQKXXPXPXXXXGAXA*PPPXXXSXPXLR 828
+ P P P + PP P P+ + +P P P GA + PPP +
Sbjct: 1020 KAPPVPLPSA-DAPPIPVPSTAPPVPIPTSTP----PVPKSSSGAPSAPPPVPAPSSEIP 1074
Query: 829 EXXXPXXXXPXXVXPLXPHAP 891
P P P P
Sbjct: 1075 SIPAPSGAPPVPAPSGIPPVP 1095
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/71 (30%), Positives = 25/71 (35%)
Frame = +2
Query: 677 PXTIPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXPXXPXPXSGXXXHPXXXX 856
P + PP PP S PP P + PP PP P P P + P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPP----PPPMSVPPPPSAPPMPAGP-PSA-----PPPPL 1735
Query: 857 PXXXXPSXPTP 889
P PS P P
Sbjct: 1736 PASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 665 PXPXPXTIPPXXSPXXXP---PSXSXXXPPKXXXXXPXAXXXPPPNPPXP 805
P P P I P +P P P+ PP A PPP PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.68
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = -1
Query: 894 GXGVGXEGXXXXGXXXXGXXXFPEXGXGXXGWGGLGGGXXXAXGXWXXFLGGXXXDXEGG 715
G G G G G F G G GG GGG G F GG G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 714 XXXGEXXGGXVXGXG 670
G GG G G
Sbjct: 252 GGFGGGPGGFGGGPG 266
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -1
Query: 819 GXGXXGWGGLGGGXXXAXGXWXXF--LGGXXXDXEGGXXXGEXXGGXVXGXG 670
G G G+GG GG G + F GG G G GG G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = -3
Query: 886 RGAXGGXXXGXXTGGVXXXPGAGGWXXGXGGVRRXXXXXXXXXGXXFGGXGXRXXGGXXV 707
RG GG G G PG GG+ G GG G GG G G
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGF-GGFGGFGGEGHHHGGHGGFG-GGPGGFEGGPGGF 240
Query: 706 XGXXGG 689
G GG
Sbjct: 241 GGGPGG 246
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/65 (26%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = +2
Query: 671 PXPXTIPPXXSPXXXP--PSXSXXXPPKXXXXXPXAXXXPPPNPPXPXXPXPXSGXXXHP 844
P P PP S P P+ PP PP PP P P + P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
Query: 845 XXXXP 859
P
Sbjct: 219 SSFAP 223
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/70 (28%), Positives = 22/70 (31%)
Frame = +3
Query: 687 SPPXIPXTXXPPXXLSPXPPKXXPXXXXXXWXXRLTPPXPXXXPPAPGXXXTPPVXXPXX 866
+PP P P L P P P + PP P PP P P P
Sbjct: 123 APPSAPAPPTPQSELRP-PTSAPPRPS-------IPPPSPASAPPIPSKAPPIPSSLPPP 174
Query: 867 XPPXAPRPXP 896
P AP P
Sbjct: 175 AQPAAPVKSP 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,573
Number of Sequences: 5004
Number of extensions: 19816
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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