Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D22
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 314 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 216
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 786 RLTPPXPXXXPPAPGXXXTPPVXXP 860
           R +PP P   PP  G    PP   P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQNP 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/47 (25%), Positives = 13/47 (27%)
 Frame = +2

Query: 665 PXPXPXTIPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXP 805
           P   P    P   P   PP       P+           P P PP P
Sbjct: 120 PEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/43 (25%), Positives = 12/43 (27%)
 Frame = +2

Query: 677 PXTIPPXXSPXXXPPSXSXXXPPKXXXXXPXAXXXPPPNPPXP 805
           P    P   P   PP       P+           P P PP P
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,380
Number of Sequences: 438
Number of extensions: 3161
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)