Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D18
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    28   1.9  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.6  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -1

Query: 697 YTNHPRXNIHFHQSPDAVXEGVRAGVKPPLSSEAPSAYLTPSSLGMXKGVSPPY-FQVND 521
           + N P   + F      +  GV     PP SS+ P  Y+        KG+S  Y   VND
Sbjct: 14  WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 715 HQSPXXYTNHPRXNIHFHQSPDAVXEGVRAGV--KPPLSSEAPSAYLTPS 572
           H  P    NHP+ +I FH   + V + ++A +  KP ++S+A +A +  S
Sbjct: 25  HLLPYTARNHPQFSIWFHNDFEPVKD-LKALLKDKPQIASQAVTALVNVS 73


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +3

Query: 516 DSSFT*K*GGETPLXMPSDEGVRYADGASDDNGGLTPARTP 638
           +SSF    G  TPL    D G  YAD A+  N    PA TP
Sbjct: 160 NSSFVGNSGSGTPLD--GDSGSFYADSANLTNREPYPAWTP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,224
Number of Sequences: 5004
Number of extensions: 32849
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)