Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D16
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.95 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 713 KQSSLVNRQIAGDAIHAVLTSIEDTG-PIQPPDSSLGRGTDNNFT 582
           K   +VN  + G+++  VLT     G  I+P   ++  G    FT
Sbjct: 284 KYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFT 328


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 665 RGWRLQRSDGSLTSSAYIDLPRTRLP 742
           +GW+++R DG+      I+     LP
Sbjct: 212 KGWKVERKDGNADGKTLIEALDAILP 237


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 16/85 (18%), Positives = 35/85 (41%)
 Frame = +1

Query: 433 TNLSVIKNPRQHNGYHTVLEEFRTGTSLLFCTNLFYSVT*IGLMVIAVSCVKLLSVPRPR 612
           T + ++ N R+  GYH       +   ++     F+         + +    LL++    
Sbjct: 201 TCIQIVFNLRRRLGYHLFHTYIPSALIVVMSWIAFWIKPEAIPARVTLGVTSLLTLATQN 260

Query: 613 LESGGWIGPVSSMEVKTAWMASPAI 687
            +S   + PVS ++    WM+S ++
Sbjct: 261 TQSQQSLPPVSYVKAIDVWMSSCSV 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,256
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)