Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D14
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   130   2e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   127   2e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    44   3e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.33 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   7.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  130 bits (315), Expect = 2e-31
 Identities = 61/92 (66%), Positives = 71/92 (77%)
 Frame = -3

Query: 631 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
           +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
           +LLAREVLR+RG L R   WDV+ DL+FYR P
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = -1

Query: 786 VVAIENPADVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFT 667
           +  IENPADV V S+R +G RAVLKF AHTG T IAGRFT
Sbjct: 67  IATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  127 bits (306), Expect = 2e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -3

Query: 631 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
           +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
           +LLAREVLRLRG + R   W+V+ DL+FYR P
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = -1

Query: 786 VVAIENPADVXVXSSRPFGQRAVLKFXAHTGXTXIAGRFT 667
           +  IENPADV V SSRP+G RAVLKF AHTG T IAGRFT
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = -3

Query: 658 LLLTRSKLHFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 479
           L+ T  K  +  P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 478 SSHSIGLMWWLLAR 437
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -3

Query: 670 HXQVLLLTRSKLHFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFV 506
           H   L+LT +   F+  +P + ++     D   +   T A    +  + LC+ +S  RF 
Sbjct: 38  HLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFA 96

Query: 505 DIAIPCNTKSSHSI 464
           D+A+  NTK +H I
Sbjct: 97  DLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 420 VVCFPVTSAGMLWLICSSTVXPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 634 HFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 503
           HF   +LL+VL     H   T   Y  I  I   NT+  LRF D
Sbjct: 263 HFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,645
Number of Sequences: 5004
Number of extensions: 54261
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)