Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_D13
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 132 4e-32
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 132 4e-32
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.7
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 2.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.9
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 5.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 6.8
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 132 bits (320), Expect = 4e-32
Identities = 64/117 (54%), Positives = 82/117 (70%)
Frame = -2
Query: 768 IMEIQLNXGTXXXQSEMGQXTFWRXLSLSILCLPQDEMIDCIGGHPRGKGYKGVTSRWHT 589
+MEIQ+N G+ + E + F + + + Q+EMID IG RGKG +G T+RW T
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGV-TRGKGNEGTTARWGT 235
Query: 588 KKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 418
K+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 115 D 113
D
Sbjct: 386 D 386
Score = 55.6 bits (128), Expect = 7e-09
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = -3
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 282
NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 132 bits (320), Expect = 4e-32
Identities = 64/117 (54%), Positives = 82/117 (70%)
Frame = -2
Query: 768 IMEIQLNXGTXXXQSEMGQXTFWRXLSLSILCLPQDEMIDCIGGHPRGKGYKGVTSRWHT 589
+MEIQ+N G+ + E + F + + + Q+EMID IG RGKG +G T+RW T
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGV-TRGKGNEGTTARWGT 235
Query: 588 KKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 418
K+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 115 D 113
D
Sbjct: 386 D 386
Score = 55.6 bits (128), Expect = 7e-09
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = -3
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 282
NAST++D +EK ITPMGGF YG V NDFVM+ G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 499 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 353
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 645 IGGHPRGKGYKGVTSRWHTKKLPRKTHK 562
+ G P+ K + G T WH+ PR T K
Sbjct: 409 VSGTPKSK-HAGSTQEWHSHTTPRSTSK 435
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 HGYTQEGSYSRRSCGYHNPS 75
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -2
Query: 714 QXTFWRXLSLSILCLPQDEMIDCI------GGHPRGKGYKGVTSRWHTKKLPRKTH 565
Q TF+ + S LP E + + GG +G GY+ S T+KL +TH
Sbjct: 273 QDTFFLKVPASTDKLPDPEYVARVKATHENGGETKGIGYRAPFSLEETRKLVLRTH 328
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 646 HWGSPKGQRIQRCHFSLAHKEATP*DTQGS 557
HWG PKGQR + ++ P + GS
Sbjct: 10 HWGVPKGQRTELYVYNTLTHSKVPFVSNGS 39
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 382 SVDALFLITLPSFLWIPW 435
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,195
Number of Sequences: 5004
Number of extensions: 66572
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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