Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_D13
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 147 1e-35
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 147 1e-35
11_04_0146 - 14091671-14092357,14092996-14093229 31 1.3
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 29 5.4
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 9.4
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 9.4
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 147 bits (356), Expect = 1e-35
Identities = 67/111 (60%), Positives = 85/111 (76%)
Frame = -2
Query: 768 IMEIQLNXGTXXXQSEMGQXTFWRXLSLSILCLPQDEMIDCIGGHPRGKGYKGVTSRWHT 589
+MEIQ+N GT + + G F + + + + +DEMID IG +GKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGV-TKGKGYEGVVTRWGV 238
Query: 588 KKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 436
+LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 86.2 bits (204), Expect = 3e-17
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 143
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -3
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 282
A TE+D +EK ITPMGGFPHYG V D++MI+G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 147 bits (356), Expect = 1e-35
Identities = 67/111 (60%), Positives = 85/111 (76%)
Frame = -2
Query: 768 IMEIQLNXGTXXXQSEMGQXTFWRXLSLSILCLPQDEMIDCIGGHPRGKGYKGVTSRWHT 589
+MEIQ+N GT + + G F + + + + +DEMID IG +GKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGV-TKGKGYEGVVTRWGV 238
Query: 588 KKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 436
+LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -3
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 282
A TE+D +EK ITPMGGFPHYG V D++MI+G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 624 KGYKGVTSRWHTKKLPRKTHKGLRKVACIGAW 529
K YK T RWH K++ K K KV +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 624 KGYKGVTSRWHTKKLPRKTHKGLRKV 547
K YK T RWH K++ K K KV
Sbjct: 29 KIYKDKTKRWHDKRIKHKEFKAREKV 54
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 349 IGVMDFSDKSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 480
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 501 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 421
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,027,357
Number of Sequences: 37544
Number of extensions: 451771
Number of successful extensions: 1133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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