Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D07
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.72 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.8  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   5.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   6.7  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   6.7  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   8.9  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -1

Query: 470 GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREKMFLCL 291
           G  Q+ +RVL   S    S   D     +  A  +L+  +  L   Q    ++ +  + L
Sbjct: 642 GESQLIERVLETFSHYYMSANPDSMS--SKDAAFVLSYSIIMLNTDQHNPNIKSQRRMTL 699

Query: 290 DEYCRRSRGGEEG 252
           D++CR  RG  +G
Sbjct: 700 DDFCRNVRGVNDG 712


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -3

Query: 744 PSRVLSNRQQTNSRSHCLGA*HSTLRAARNRRSDPSNQGSWNELLLFAIAWRSMEFLNDE 565
           PS+VLS+ +   S S+ +     T R+      D  ++ +  E   +   +RS+  LND+
Sbjct: 240 PSKVLSDSEFYKSLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQ 299

Query: 564 XRER 553
              R
Sbjct: 300 LHSR 303


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = -1

Query: 560 ENVDSRNTAPPQLICLMPGMTLHRNSALQAG-----VG-QIFDRVLSELSLKMRSLRMDQ 399
           + + SRN     L+C++ G   H ++A+ AG     +G ++  R+L+  ++  R L M Q
Sbjct: 258 KRLSSRNHNSQPLVCILVGSHDHASAAVAAGRRLCAIGIKVVLRLLTPFNVDNRQLLMFQ 317

Query: 398 A 396
           A
Sbjct: 318 A 318


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 548 SRNTAPPQLIC-LMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYV 387
           +RN++P  +    +  +  HR ++  +G   + DRV+S+L  ++ S+  D  +YV
Sbjct: 743 ARNSSPCVIFFDELDSIAPHRGNSSDSG--NVMDRVVSQLLAELDSISKDNNKYV 795


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 300 EHLFSKNVHFLFILQSLYVRIEEYDGLERDVLGLVHAEGAHLERQ 434
           + + S N HFLF   S    +  Y+  + D  GL      H+ER+
Sbjct: 690 QDVLSLNPHFLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 SKNVHFLF-ILQSLYVRIEEYDGLERDVLGLVHAE 413
           S  V +LF I+ S +V I+EY   + + LG +H E
Sbjct: 266 STPVTYLFVIIDSEFVLIDEYIHEDTEALGYIHME 300


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 387 DVLGLVHAEGAHLERQLGEHAVEDLPHA 470
           DV GL+   GAH  + LG   ++DL HA
Sbjct: 83  DVAGLI--PGAHAGKGLGNKFLDDLRHA 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,121
Number of Sequences: 5004
Number of extensions: 36901
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)