Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D07
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0356 + 18073794-18074052,18074054-18074163                       28   7.0  
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487...    28   9.3  

>02_03_0356 + 18073794-18074052,18074054-18074163
          Length = 122

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 385 ATYSAWSMRRERILSDSS--ESTRSKICPTPACSAELR 492
           AT S  + ++ R  +D+S  ES RSK+CP  +  A LR
Sbjct: 12  ATTSCSASKKPRASTDASYAESLRSKLCPDASILATLR 49


>03_06_0042 +
           31247084-31247641,31248396-31248482,31248684-31248779,
           31248897-31248998,31249455-31249541,31249692-31249759,
           31249879-31249963
          Length = 360

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -1

Query: 524 LICLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKG 345
           +ICLM    LHR++ +   V   +       +  M  L++   EY A        P V+ 
Sbjct: 172 IICLMAATPLHRHAKVVRMVVSTYQAASGAGAAAMEELKLQTQEY-AFNIFSHNAPIVEN 230

Query: 344 LKNKQEVDVLRE 309
             N++E+ +++E
Sbjct: 231 GYNEEEMKMVKE 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,260
Number of Sequences: 37544
Number of extensions: 286492
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)