Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_D07
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 60 2e-09
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 53 3e-07
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 53 3e-07
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 53 3e-07
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 53 3e-07
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 50 2e-06
AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear recep... 50 2e-06
AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear recep... 50 2e-06
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 50 2e-06
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 50 2e-06
U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone... 47 1e-05
U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone... 47 1e-05
AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear recep... 47 1e-05
AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear recep... 47 1e-05
AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear recep... 47 1e-05
AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear recep... 47 1e-05
U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone... 47 2e-05
U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone... 47 2e-05
AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear recep... 47 2e-05
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear recep... 45 7e-05
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 45 7e-05
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 45 7e-05
AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear recep... 45 7e-05
EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isofo... 42 5e-04
EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isofo... 42 5e-04
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 40 0.003
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 40 0.003
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 40 0.003
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 38 0.008
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 38 0.008
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 38 0.010
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 38 0.010
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 38 0.010
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 38 0.010
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 38 0.010
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 38 0.010
Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical p... 36 0.031
U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 36 0.031
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 36 0.041
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 36 0.041
Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z92825-1|CAB07313.1| 415|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical p... 35 0.055
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 35 0.072
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 35 0.072
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 34 0.095
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 34 0.095
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 34 0.095
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 34 0.095
U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 33 0.17
Z75955-10|CAB00124.2| 410|Caenorhabditis elegans Hypothetical p... 33 0.17
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 33 0.17
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 33 0.17
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 33 0.17
AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical ... 33 0.22
Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical pr... 32 0.38
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 32 0.38
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 32 0.38
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 32 0.38
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 32 0.38
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 32 0.51
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 32 0.51
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 32 0.51
AY204162-1|AAO39166.1| 112|Caenorhabditis elegans nuclear recep... 32 0.51
Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical p... 31 0.67
AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical ... 31 0.67
AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic mul... 31 0.67
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 31 0.67
Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 31 0.89
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 31 0.89
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 31 0.89
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 31 0.89
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 31 1.2
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 31 1.2
U97008-3|AAB52308.1| 380|Caenorhabditis elegans Hypothetical pr... 31 1.2
U40160-2|AAA81156.1| 547|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 30 1.6
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 30 1.6
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 30 1.6
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 30 1.6
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 30 1.6
AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear recep... 30 1.6
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 30 1.6
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 30 1.6
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 30 1.6
Z81050-13|CAB02857.3| 448|Caenorhabditis elegans Hypothetical p... 30 2.1
Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF078157-6|AAQ62458.1| 406|Caenorhabditis elegans Hypothetical ... 30 2.1
Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97003-2|AAB52271.2| 376|Caenorhabditis elegans Hypothetical pr... 29 2.7
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 29 2.7
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 29 4.7
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear recep... 28 6.3
AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical ... 28 6.3
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 6.3
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 28 8.3
U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related... 28 8.3
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 60.1 bits (139), Expect = 2e-09
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRN 540
++Q+ I WA+ +P F L DQ L+K + + G + S + EN
Sbjct: 150 HQQLVLFIEWAKSLPQFSFLAQADQAALLKGGAASI---IVLGVAYRSICLTVENT---- 202
Query: 539 TAPPQLICLMPGMTLHRNSALQAG-VGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILL 363
ICL L + A Q G + + R++ E+ MR L MD EYVALKAI+
Sbjct: 203 ------ICLANDTLLPKEHATQVGDINCVVGRIIDEIVNPMRRLNMDLIEYVALKAILFF 256
Query: 362 NPDVKGLKNKQEVDVLREKMFLCLDEYC 279
NP V+ + ++ V+ R L C
Sbjct: 257 NPVVREINDQSPVENARYAFLRSLQRRC 284
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 60.1 bits (139), Expect = 2e-09
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRN 540
++Q+ I WA+ +P F L DQ L+K + + G + S + EN
Sbjct: 150 HQQLVLFIEWAKSLPQFSFLAQADQAALLKGGAASI---IVLGVAYRSICLTVENT---- 202
Query: 539 TAPPQLICLMPGMTLHRNSALQAG-VGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILL 363
ICL L + A Q G + + R++ E+ MR L MD EYVALKAI+
Sbjct: 203 ------ICLANDTLLPKEHATQVGDINCVVGRIIDEIVNPMRRLNMDLIEYVALKAILFF 256
Query: 362 NPDVKGLKNKQEVDVLREKMFLCLDEYC 279
NP V+ + ++ V+ R L C
Sbjct: 257 NPVVREINDQSPVENARYAFLRSLQRRC 284
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 52.8 bits (121), Expect = 3e-07
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPG----TNCCCSLSHGGLWSSSMMXRENV 552
+ Q+ +I WA+ +P F QL DQ +L+K T C S G + ++ +
Sbjct: 186 HSQLLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYI 245
Query: 551 DSRNTAPPQLICLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAI 372
+ P L + G L ++V+ +L MR L++D E+VALKA
Sbjct: 246 PRASKTTPHLKEYVDGFYLRD-----------CEKVMDQLVEPMRFLKLDNKEFVALKAC 294
Query: 371 ILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCR 276
+L NP GL N VL R K+F ++Y R
Sbjct: 295 VLFNPVAPGLSNHAVNLVLNARRKIFAAFEKYVR 328
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 52.8 bits (121), Expect = 3e-07
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPG----TNCCCSLSHGGLWSSSMMXRENV 552
+ Q+ +I WA+ +P F QL DQ +L+K T C S G + ++ +
Sbjct: 242 HSQLLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYI 301
Query: 551 DSRNTAPPQLICLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAI 372
+ P L + G L ++V+ +L MR L++D E+VALKA
Sbjct: 302 PRASKTTPHLKEYVDGFYLRD-----------CEKVMDQLVEPMRFLKLDNKEFVALKAC 350
Query: 371 ILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCR 276
+L NP GL N VL R K+F ++Y R
Sbjct: 351 VLFNPVAPGLSNHAVNLVLNARRKIFAAFEKYVR 384
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 52.8 bits (121), Expect = 3e-07
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPG----TNCCCSLSHGGLWSSSMMXRENV 552
+ Q+ +I WA+ +P F QL DQ +L+K T C S G + ++ +
Sbjct: 187 HSQLLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYI 246
Query: 551 DSRNTAPPQLICLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAI 372
+ P L + G L ++V+ +L MR L++D E+VALKA
Sbjct: 247 PRASKTTPHLKEYVDGFYLRD-----------CEKVMDQLVEPMRFLKLDNKEFVALKAC 295
Query: 371 ILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCR 276
+L NP GL N VL R K+F ++Y R
Sbjct: 296 VLFNPVAPGLSNHAVNLVLNARRKIFAAFEKYVR 329
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 52.8 bits (121), Expect = 3e-07
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 719 NKQIAXLIVWARDIPHFGQLEIDDQILLIKAPG----TNCCCSLSHGGLWSSSMMXRENV 552
+ Q+ +I WA+ +P F QL DQ +L+K T C S G + ++ +
Sbjct: 208 HSQLLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYI 267
Query: 551 DSRNTAPPQLICLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAI 372
+ P L + G L ++V+ +L MR L++D E+VALKA
Sbjct: 268 PRASKTTPHLKEYVDGFYLRD-----------CEKVMDQLVEPMRFLKLDNKEFVALKAC 316
Query: 371 ILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCR 276
+L NP GL N VL R K+F ++Y R
Sbjct: 317 VLFNPVAPGLSNHAVNLVLNARRKIFAAFEKYVR 350
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 LHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNK--QEV 324
LH++S + ++ +R++ +++ MRSL M++ EY+ALKAI +P KG+ ++ +V
Sbjct: 197 LHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFFDPLAKGITSESYSDV 256
Query: 323 DVLREKMFLCLDEYCR 276
+ +R+++ + + R
Sbjct: 257 EEMRQRILESFERHVR 272
>AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 369
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 LHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNK--QEV 324
LH++S + ++ +R++ +++ MRSL M++ EY+ALKAI +P KG+ ++ +V
Sbjct: 222 LHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFFDPLAKGITSESYSDV 281
Query: 323 DVLREKMFLCLDEYCR 276
+ +R+++ + + R
Sbjct: 282 EEMRQRILESFERHVR 297
>AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 234
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 LHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNK--QEV 324
LH++S + ++ +R++ +++ MRSL M++ EY+ALKAI +P KG+ ++ +V
Sbjct: 87 LHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFFDPLAKGITSESYSDV 146
Query: 323 DVLREKMFLCLDEYCR 276
+ +R+++ + + R
Sbjct: 147 EEMRQRILESFERHVR 162
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 LHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNK--QEV 324
LH++S + ++ +R++ +++ MRSL M++ EY+ALKAI +P KG+ ++ +V
Sbjct: 240 LHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFFDPLAKGITSESYSDV 299
Query: 323 DVLREKMFLCLDEYCR 276
+ +R+++ + + R
Sbjct: 300 EEMRQRILESFERHVR 315
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 497 LHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNK--QEV 324
LH++S + ++ +R++ +++ MRSL M++ EY+ALKAI +P KG+ ++ +V
Sbjct: 265 LHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFFDPLAKGITSESYSDV 324
Query: 323 DVLREKMFLCLDEYCR 276
+ +R+++ + + R
Sbjct: 325 EEMRQRILESFERHVR 340
>U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform c protein.
Length = 544
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 273 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 332
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 333 LKAIIILNPNAKGLSEHARHAISELRDKV 361
>U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform a protein.
Length = 583
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 312 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 371
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 372 LKAIIILNPNAKGLSEHARHAISELRDKV 400
>AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 565
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 294 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 353
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 354 LKAIIILNPNAKGLSEHARHAISELRDKV 382
>AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 595
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 324 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 383
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 384 LKAIIILNPNAKGLSEHARHAISELRDKV 412
>AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 421
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 150 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 209
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 210 LKAIIILNPNAKGLSEHARHAISELRDKV 238
>AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 583
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = -1
Query: 548 SRNTAPPQLICLMPGMTLHRNSALQAGVGQ-----IFDRVLSELSLKMRSLRMDQAEYVA 384
++NT P ++CL + R + + DR L+EL +R L + + E V
Sbjct: 312 AQNTKNPDILCLCSHSFVPRRLPPEFNETNHLSNFLIDRTLNELVAPLRKLNLKEEEIVP 371
Query: 383 LKAIILLNPDVKGLKN--KQEVDVLREKM 303
LKAII+LNP+ KGL + + LR+K+
Sbjct: 372 LKAIIILNPNAKGLSEHARHAISELRDKV 400
>U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform b protein.
Length = 434
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEY 282
R++ EL +R LR D AE+ LKA++LLNPDV G+ N ++ + R+ + L Y
Sbjct: 241 RIIDELLTPLRRLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 298
>U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform a protein.
Length = 435
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEY 282
R++ EL +R LR D AE+ LKA++LLNPDV G+ N ++ + R+ + L Y
Sbjct: 241 RIIDELLTPLRRLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 298
>AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear receptor
NHR-14 protein.
Length = 288
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEY 282
R++ EL +R LR D AE+ LKA++LLNPDV G+ N ++ + R+ + L Y
Sbjct: 94 RIIDELLTPLRRLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 151
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 291 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 335
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 306 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 350
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 281 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 325
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 282 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 326
>AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 381
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 276 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 320
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 280 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 324
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 279 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 323
>AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 337
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 458 IFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV 324
I RVL E+ MR L+M + E+V LKA+ L+P+ KGL N ++
Sbjct: 142 ITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQI 186
>EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isoform
protein.
Length = 370
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/56 (30%), Positives = 35/56 (62%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGE 258
K+R +D E +L+A++L + D + L+ K +++ + EK+ +DEYC+ ++ E
Sbjct: 255 KIRDFHLDVVESSSLRAVLLFSCDEEALEEKGKIEEIVEKLKSAVDEYCKMNKRSE 310
>EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isoform
protein.
Length = 357
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/56 (30%), Positives = 35/56 (62%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGE 258
K+R +D E +L+A++L + D + L+ K +++ + EK+ +DEYC+ ++ E
Sbjct: 242 KIRDFHLDVVESSSLRAVLLFSCDEEALEEKGKIEEIVEKLKSAVDEYCKMNKRSE 297
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 464 GQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV-DVLREKMFLCLD 288
G+I + ++++ M+ L MD+ E V LKAI L PD + + +V REK L
Sbjct: 290 GRITESFMADVVNSMKELEMDETEMVLLKAICHLQPDYRLTRRGNDVISTGREKYKRALC 349
Query: 287 EYCRRSRGG 261
EY R G
Sbjct: 350 EYIRMKSNG 358
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 464 GQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV-DVLREKMFLCLD 288
G+I + ++++ M+ L MD+ E V LKAI L PD + + +V REK L
Sbjct: 290 GRITESFMADVVNSMKELEMDETEMVLLKAICHLQPDYRLTRRGNDVISTGREKYKRALC 349
Query: 287 EYCRRSRGG 261
EY R G
Sbjct: 350 EYIRMKSNG 358
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 464 GQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEV-DVLREKMFLCLD 288
G+I + ++++ M+ L MD+ E V LKAI L PD + + +V REK L
Sbjct: 206 GRITESFMADVVNSMKELEMDETEMVLLKAICHLQPDYRLTRRGNDVISTGREKYKRALC 265
Query: 287 EYCRRSRGG 261
EY R G
Sbjct: 266 EYIRMKSNG 274
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCR 276
++L +L MRS+ +D E+ A KAI LNPD + + K+ + R + L Y
Sbjct: 278 QMLDQLLKPMRSMEIDMTEFAAFKAIFFLNPDADDVDSNAKKTLSDGRSAITNALYRYMV 337
Query: 275 RSRGGEE 255
+ +G E+
Sbjct: 338 KKKGAED 344
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCR 276
++L +L MRS+ +D E+ A KAI LNPD + + K+ + R + L Y
Sbjct: 278 QMLDQLLKPMRSMEIDMTEFAAFKAIFFLNPDADDVDSNAKKTLSDGRSAITNALYRYMV 337
Query: 275 RSRGGEE 255
+ +G E+
Sbjct: 338 KKKGAED 344
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 317 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 372
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 322 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 377
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 313 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 368
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 322 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 377
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 317 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 372
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 473 AGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
+G I+ R + E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 317 SGCRPIYTRQMDEIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 372
>Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical
protein R07B7.16 protein.
Length = 412
Score = 35.9 bits (79), Expect = 0.031
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = -1
Query: 467 VGQI-FDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQE--VDVLREKMFL 297
+G+I + L ++ + +D+ EY+ LKAI++ NP V GL + ++ R +
Sbjct: 287 LGEIKYKNQLQQILHAFLRINVDRVEYMILKAILMRNPSVPGLTLDDQLIIENERNQYAK 346
Query: 296 CLDEYCRRSRGGEEG-XXXXXXXXXXXXRSISLKSFEHLYLFHLVXRGQRELVHPRRAL 123
L EY G G K + +Y+F QRE HP ++L
Sbjct: 347 ALLEYTILHHGVLSGPARFGSLIAINPIIETQSKKQKDVYVFMKTLSAQRECSHPPKSL 405
>U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical
protein F07C3.10 protein.
Length = 562
Score = 35.9 bits (79), Expect = 0.031
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = -1
Query: 698 IVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLI 519
I +A+ P F QLE +D+ILL KA S+ + S M + D I
Sbjct: 248 IEYAKTFPFFQQLESNDKILLTKATTFMNLALTSNYSSFLSKMAVLQMPDG--------I 299
Query: 518 CLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLK 339
C+ G +++ ++ R+++ L +R+L D+ EYV LKAIIL N V L
Sbjct: 300 CI-SGPVGQGEHEIRSFERRLSLRIMAPL---IRNL-FDRTEYVLLKAIILCNHAVTDLS 354
Query: 338 NKQEVDVLREKMFL--CLDEYCRRSRGGEEG 252
+ + RE+ L YC G G
Sbjct: 355 CAAQNILTRERHNFTGALLLYCLSRHGSHAG 385
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 35.5 bits (78), Expect = 0.041
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 524 LICLMPGMTLHRNSA---LQAG-VGQIF-DRVLSELSLKMRSLRMDQAEYVALKAIILLN 360
LICL T++R A L VG F RV+ +L + L + E L A+I+L+
Sbjct: 283 LICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPEITILSALIILD 342
Query: 359 PDVKGLKNK 333
PD +GL +
Sbjct: 343 PDARGLSQE 351
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 35.5 bits (78), Expect = 0.041
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 524 LICLMPGMTLHRNSA---LQAG-VGQIF-DRVLSELSLKMRSLRMDQAEYVALKAIILLN 360
LICL T++R A L VG F RV+ +L + L + E L A+I+L+
Sbjct: 278 LICLCNKSTINRQPARHLLDTNLVGNNFVGRVIDDLVFPTKKLALTNPEITILSALIILD 337
Query: 359 PDVKGLKNK 333
PD +GL +
Sbjct: 338 PDARGLSQE 346
>Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 410 RMDQAEYVALKAIILLNPDVKGLK--NKQEVDVLREKMFLCLDEYCRRSRGGEEG 252
++D+ EY+ KAI+L NP V GL N++ ++ R + L YC G +G
Sbjct: 358 KVDKIEYLLFKAIMLCNPAVPGLDSWNQEIIEKERNQYVKALLNYCLLQHGKLQG 412
>Z92825-1|CAB07313.1| 415|Caenorhabditis elegans Hypothetical
protein C13C4.1 protein.
Length = 415
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 407 MDQAEYVALKAIILLNPDVKGLKNKQEVDVLREKMFL--CLDEYCRRSRGGEEG 252
+D+ EY+ LKAI+L NP + L + RE+ CL YC G G
Sbjct: 306 VDKTEYILLKAIVLCNPAIIDLPYADSKHIQREREVYAQCLFRYCLLQHGTLHG 359
>Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 410 RMDQAEYVALKAIILLNPDVKGLK--NKQEVDVLREKMFLCLDEYCRRSRGGEEG 252
++D+ EY+ KAI+L NP V GL N++ ++ R + L YC G +G
Sbjct: 358 KVDKIEYLLFKAIMLCNPAVPGLDSWNQEIIEKERNQYVKALLNYCLLQHGKLQG 412
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYCRRSR 267
EY+ LKAI+L NP V L K+++ + + R K L YC RSR
Sbjct: 345 EYLLLKAIVLCNPAVPDLSAKSQEIISLERVKYADALFNYCLRSR 389
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYCRRSR 267
EY+ LKAI+L NP V L K+++ + + R K L YC RSR
Sbjct: 344 EYLLLKAIVLCNPAVPDLSAKSQEIISLERVKYADALFNYCLRSR 388
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/77 (18%), Positives = 38/77 (49%)
Frame = -1
Query: 728 QIGNKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVD 549
Q+ + + +++WA++ F +L +DDQ++L++ T + +++ + +
Sbjct: 274 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 333
Query: 548 SRNTAPPQLICLMPGMT 498
+ + P L+ L+ T
Sbjct: 334 NGDEVPVGLVALLGNQT 350
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/77 (18%), Positives = 38/77 (49%)
Frame = -1
Query: 728 QIGNKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVD 549
Q+ + + +++WA++ F +L +DDQ++L++ T + +++ + +
Sbjct: 354 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 413
Query: 548 SRNTAPPQLICLMPGMT 498
+ + P L+ L+ T
Sbjct: 414 NGDEVPVGLVALLGNQT 430
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/77 (18%), Positives = 38/77 (49%)
Frame = -1
Query: 728 QIGNKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVD 549
Q+ + + +++WA++ F +L +DDQ++L++ T + +++ + +
Sbjct: 274 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 333
Query: 548 SRNTAPPQLICLMPGMT 498
+ + P L+ L+ T
Sbjct: 334 NGDEVPVGLVALLGNQT 350
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/77 (18%), Positives = 38/77 (49%)
Frame = -1
Query: 728 QIGNKQIAXLIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVD 549
Q+ + + +++WA++ F +L +DDQ++L++ T + +++ + +
Sbjct: 350 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 409
Query: 548 SRNTAPPQLICLMPGMT 498
+ + P L+ L+ T
Sbjct: 410 NGDEVPVGLVALLGNQT 426
>U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical
protein C03G6.10 protein.
Length = 370
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGLKNKQEVDVLREK-MFL-CLDEYCRRS 270
EY+ LKAI NP V L K + + RE+ F+ L +YC+RS
Sbjct: 273 EYILLKAICCCNPAVPNLSQKAQSTLARERGQFVSILFDYCQRS 316
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQE--VDVLREKMFLCL 291
+++ L + E V LKA+I LNPD GL + E + +LRE++ L
Sbjct: 302 ELKPLCLRAKEIVLLKALIALNPDANGLSSDAESSIRMLRERVHTAL 348
>Z75955-10|CAB00124.2| 410|Caenorhabditis elegans Hypothetical
protein R07B7.15 protein.
Length = 410
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 413 LRMDQAEYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYCRRSRGGEEG 252
++++ EY+ LK I +LNP V L ++++ ++ R + CL YC R G
Sbjct: 306 IKLNDVEYLFLKVITILNPAVSDLFAQDQKIIERERNRFAQCLLTYCLREYAENNG 361
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQE--VDVLREKMFLCL 291
+++ L + E V LKA+I LNPD GL + E + +LRE++ L
Sbjct: 302 ELKPLCLRAKEIVLLKALIALNPDANGLSSDAESSIRMLRERVHTAL 348
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQE--VDVLREKMFLCL 291
+++ L + E V LKA+I LNPD GL + E + +LRE++ L
Sbjct: 202 ELKPLCLRAKEIVLLKALIALNPDANGLSSDAESSIRMLRERVHTAL 248
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 425 KMRSLRMDQAEYVALKAIILLNPDVKGLKNKQE--VDVLREKMFLCL 291
+++ L + E V LKA+I LNPD GL + E + +LRE++ L
Sbjct: 302 ELKPLCLRAKEIVLLKALIALNPDANGLSSDAESSIRMLRERVHTAL 348
>AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical
protein C17E7.6 protein.
Length = 359
Score = 33.1 bits (72), Expect = 0.22
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Frame = -1
Query: 665 QLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLICLMPGMTLHRN 486
+L D+++L++ + C + VD ++ P ++ L+
Sbjct: 183 KLSTPDKLILLRHSASKCALLGGAMRTYLDKKDRMTTVDGQDIYPKEMRALL-------- 234
Query: 485 SALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDV---KGLKNKQEVDVL 315
Q G Q DRV S L K+ L + E + + AII +P V + N Q++
Sbjct: 235 -GFQQGADQFLDRVRSLLISKLAELDVTTEECILISAIIFCDPAVFYDQDNPNAQQIVSA 293
Query: 314 REKMFL-CLDEYC 279
+++ F L +YC
Sbjct: 294 QQQNFTSALSQYC 306
>Z50004-1|CAA90291.1| 396|Caenorhabditis elegans Hypothetical
protein C02B4.2 protein.
Length = 396
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -1
Query: 446 VLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL-KNKQEVDVLREKMFL 297
V++++ + +R +R+ + EYV L+AII +PD L K+ ++ + K L
Sbjct: 276 VINDVLVPIRRMRLTKVEYVLLQAIIFFDPDCLSLTKHGSQLIAAKRKRLL 326
>Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical
protein R07B7.14 protein.
Length = 406
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 410 RMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCRRSRG 264
++D+ EY+ LK I+L NP + GL +Q ++ R + L YC + G
Sbjct: 303 KIDETEYLLLKGIVLCNPAICGLPESAQQILEDERRRYVRSLLTYCLKQYG 353
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 422 MRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCRRSRGGE 258
MR L++ ++ +V K ++ NPD GL + K+ ++ R ++ L Y RG E
Sbjct: 352 MRQLKIKESTFVLYKMLLFHNPDADGLSSLGKKTIENERMRLLTQLFSYLSTERGKE 408
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 422 MRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCRRSRGGE 258
MR L++ ++ +V K ++ NPD GL + K+ ++ R ++ L Y RG E
Sbjct: 331 MRQLKIKESTFVLYKMLLFHNPDADGLSSLGKKTIENERMRLLTQLFSYLSTERGKE 387
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 422 MRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCRRSRGGE 258
MR L++ ++ +V K ++ NPD GL + K+ ++ R ++ L Y RG E
Sbjct: 336 MRQLKIKESTFVLYKMLLFHNPDADGLSSLGKKTIENERMRLLTQLFSYLSTERGKE 392
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 422 MRSLRMDQAEYVALKAIILLNPDVKGLKN--KQEVDVLREKMFLCLDEYCRRSRGGE 258
MR L++ ++ +V K ++ NPD GL + K+ ++ R ++ L Y RG E
Sbjct: 336 MRQLKIKESTFVLYKMLLFHNPDADGLSSLGKKTIENERMRLLTQLFSYLSTERGKE 392
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGLK-NKQEV-DVLREKMFLCLDEYCRRSR 267
EY LKAI L NP V L + QE+ REK L +YC R+R
Sbjct: 350 EYTLLKAICLCNPAVPDLSHHAQEILSKEREKYADALFDYCLRTR 394
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGLK-NKQEV-DVLREKMFLCLDEYCRRSR 267
EY LKAI L NP V L + QE+ REK L +YC R+R
Sbjct: 350 EYTLLKAICLCNPAVPDLSHHAQEILSKEREKYADALFDYCLRTR 394
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 437 ELSLK-MRSLRMDQAEYVALKAIILLNPD 354
+L LK R LR+D E+ A KA+ LNPD
Sbjct: 290 DLVLKPFRDLRLDATEFAAFKAVTFLNPD 318
>AY204162-1|AAO39166.1| 112|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 112
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 437 ELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVLREK 306
E+ + R L++ AE+ KA + NPD L + + +V E+
Sbjct: 1 EIMIPFRKLQLSVAEFATFKAALFFNPDALDLSPQAKQEVFEER 44
>Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 304 IFSRRTSTSCLFFNPFTSGLRSMMALSATYSAWSMRRERILSDSSESTRSKI 459
I + +CL FNP++ + + + T + W +R R+ S ES R +I
Sbjct: 261 IDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEI 312
>AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 304 IFSRRTSTSCLFFNPFTSGLRSMMALSATYSAWSMRRERILSDSSESTRSKI 459
I + +CL FNP++ + + + T + W +R R+ S ES R +I
Sbjct: 261 IDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEI 312
>AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic
multivulva protein LIN-53 p48 protein.
Length = 417
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 304 IFSRRTSTSCLFFNPFTSGLRSMMALSATYSAWSMRRERILSDSSESTRSKI 459
I + +CL FNP++ + + + T + W +R R+ S ES R +I
Sbjct: 261 IDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEI 312
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -1
Query: 461 QIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL 342
Q+ +R + EL ++ + + + E +KAII+LNP +K L
Sbjct: 287 QLAERCIDELIDPLKKMNLKEEEITLIKAIIVLNPYLKTL 326
>Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical
protein C13C4.3 protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 407 MDQAEYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYCRRSRGGEEG 252
+++ EY+ LKAI+L NP V L +Q + RE+ L YC + G G
Sbjct: 330 LNRIEYMLLKAIVLCNPAVSSLSISVQQIIGKEREEYVRTLLTYCLLNYGSVHG 383
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 464 EHLMEDLVIPMREMDMDEGEFVILKALIL 492
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 446 EHLMEDLVIPMREMDMDEGEFVILKALIL 474
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 464 EHLMEDLVIPMREMDMDEGEFVILKALIL 492
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 446 EHLMEDLVIPMREMDMDEGEFVILKALIL 474
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 332 EHLMEDLVIPMREMDMDEGEFVILKALIL 360
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIIL 366
+ ++ +L + MR + MD+ E+V LKA+IL
Sbjct: 342 EHLMEDLVIPMREMDMDEGEFVILKALIL 370
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 410 RMDQAEYVALKAIILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCRRSRG 264
++ Q EYV LKAI L NP V L ++ + R+K L ++C R+ G
Sbjct: 317 QVQQIEYVLLKAICLCNPAVPDLSKHAQLLLAEERQKYSEALLDHCIRNIG 367
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 410 RMDQAEYVALKAIILLNPDVKGLKNKQEVDVL--REKMFLCLDEYCRRSRG 264
++ Q EYV LKAI L NP V L ++ + R+K L ++C R+ G
Sbjct: 296 QVQQIEYVLLKAICLCNPAVPDLSKHAQLLLAEERQKYSEALLDHCIRNIG 346
>U97008-3|AAB52308.1| 380|Caenorhabditis elegans Hypothetical
protein C03G6.8 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGLKNKQEVDVLREKMFL--CLDEYCRRSR 267
EYV LKA+ NP V GL + + +E+ L + CR++R
Sbjct: 283 EYVLLKAMCFCNPAVTGLSQHAQTTLAKERQQFGNLLFDLCRKNR 327
>U40160-2|AAA81156.1| 547|Caenorhabditis elegans Hypothetical
protein C56E10.1 protein.
Length = 547
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = -1
Query: 488 NSALQAGVGQIFDRVLSELSLKMRSL---RMDQAEYVALKAIILLNP----DVKGLKN-- 336
+S Q Q + + E +L +R ++D+ EYV KAI L N + GL +
Sbjct: 413 DSISQMMTKQKMEEMKEEFTLSIRQFVTYQLDKREYVLFKAITLCNASKYFSISGLSDHA 472
Query: 335 KQEVDVLREKMFLCLDEYCRRSRG 264
++ V +EK L +YC +RG
Sbjct: 473 REVVTREKEKYSKALMKYCLANRG 496
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 692 WARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLICL 513
W R +P + Q+ I+DQI+L K + G + M V A + +C
Sbjct: 309 WLRALPEYNQMSIEDQIVLAK----------NRYGTFHWWMCANWTVQ----AGCEGVCY 354
Query: 512 MPGMTLHRNSALQA--GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL 342
G + Q V R+ LS+ ++ L +D+ E V + A+I+ + ++ L
Sbjct: 355 SNGAYFPKQPEAQCIPDVKGSSGRMYDSLSIPIKELNLDETEIVLMLAVIIFSDEITEL 413
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 692 WARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLICL 513
W R +P + Q+ I+DQI+L K + G + M V A + +C
Sbjct: 309 WLRALPEYNQMSIEDQIVLAK----------NRYGTFHWWMCANWTVQ----AGCEGVCY 354
Query: 512 MPGMTLHRNSALQA--GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL 342
G + Q V R+ LS+ ++ L +D+ E V + A+I+ + ++ L
Sbjct: 355 SNGAYFPKQPEAQCIPDVKGSSGRMYDSLSIPIKELNLDETEIVLMLAVIIFSDEITEL 413
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -1
Query: 449 RVLSELSLK-MRSLRMDQAEYVALKAIILLNPDVKGL 342
R ++E+ ++ +R L + + E VALKAI+ L+ +VKGL
Sbjct: 347 RNMTEMIIQQLRRLNVTKTEMVALKAIMALDHNVKGL 383
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 437 ELSLK-MRSLRMDQAEYVALKAIILLNPD 354
+L LK R L++D E+ A KA+ LNPD
Sbjct: 299 DLVLKPFRDLQLDATEFAAFKAVTFLNPD 327
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 692 WARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLICL 513
W R +P + Q+ I+DQI+L K + G + M V A + +C
Sbjct: 283 WLRALPEYNQMSIEDQIVLAK----------NRYGTFHWWMCANWTVQ----AGCEGVCY 328
Query: 512 MPGMTLHRNSALQA--GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL 342
G + Q V R+ LS+ ++ L +D+ E V + A+I+ + ++ L
Sbjct: 329 SNGAYFPKQPEAQCIPDVKGSSGRMYDSLSIPIKELNLDETEIVLMLAVIIFSDEITEL 387
>AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 454
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 692 WARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWSSSMMXRENVDSRNTAPPQLICL 513
W R +P + Q+ I+DQI+L K + G + M V A + +C
Sbjct: 248 WLRALPEYNQMSIEDQIVLAK----------NRYGTFHWWMCANWTVQ----AGCEGVCY 293
Query: 512 MPGMTLHRNSALQA--GVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL 342
G + Q V R+ LS+ ++ L +D+ E V + A+I+ + ++ L
Sbjct: 294 SNGAYFPKQPEAQCIPDVKGSSGRMYDSLSIPIKELNLDETEIVLMLAVIIFSDEITEL 352
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -1
Query: 449 RVLSELSLK-MRSLRMDQAEYVALKAIILLNPDVKGL 342
R ++E+ ++ +R L + + E VALKAI+ L+ +VKGL
Sbjct: 347 RNMTEMIIQQLRRLNVTKTEMVALKAIMALDHNVKGL 383
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = -1
Query: 449 RVLSELSLK-MRSLRMDQAEYVALKAIILLNPDVKGL 342
R ++E+ ++ +R L + + E VALKAI+ L+ +VKGL
Sbjct: 347 RNMTEMIIQQLRRLNVTKTEMVALKAIMALDHNVKGL 383
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 437 ELSLK-MRSLRMDQAEYVALKAIILLNPD 354
+L LK R L++D E+ A KA+ LNPD
Sbjct: 299 DLVLKPFRDLQLDATEFAAFKAVTFLNPD 327
>Z81050-13|CAB02857.3| 448|Caenorhabditis elegans Hypothetical
protein C50B6.8 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -1
Query: 464 GQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL-KNKQEV-DVLREKMFLCL 291
G ++ + ++ +R + + E+V LKAI L NP V L ++ QE+ RE+ L
Sbjct: 328 GMVYAETVMSIAPLIRC-EIQETEFVLLKAICLCNPAVPDLSQHAQEILGREREQYADAL 386
Query: 290 DEYCRRSR 267
++C R+R
Sbjct: 387 FDHCLRNR 394
>Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical
protein F55D12.4 protein.
Length = 424
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -1
Query: 395 EYVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGE 258
E ++ II L D + L+ K +++ + EK+ +DEYC+ ++ E
Sbjct: 319 EVASVILIIGLISDEEALEEKGKIEEIVEKLKSAVDEYCKMNKRSE 364
>Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical
protein F58G6.7 protein.
Length = 166
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 701 LIVWARDIPHFGQLEIDDQILLIKAPGTNCCCSLSHGGLWS 579
LI + + FG+ ++ ++ +++ +CCCS GLW+
Sbjct: 40 LIAFCLEALKFGRTKLSPKVKIVEKK-VDCCCSTEKDGLWN 79
>AF078157-6|AAQ62458.1| 406|Caenorhabditis elegans Hypothetical
protein F25E5.6b protein.
Length = 406
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -1
Query: 464 GQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDVL--REKMFLCL 291
G ++ + ++ +R + + EY+ LKAI L NP V L + + RE+ L
Sbjct: 286 GMVYAETVMSMAPLIRC-NIQEIEYILLKAICLCNPAVPELSTHAQKILAKEREQYADAL 344
Query: 290 DEYCRRSR 267
++C RSR
Sbjct: 345 FDHCIRSR 352
>Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical
protein R07B7.13 protein.
Length = 410
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 413 LRMDQAEYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYCRRSRGGEEG 252
+++D EY+ LKAI + NP V ++++ +D R L YC + G G
Sbjct: 306 VKLDYVEYLFLKAITMCNPAVSDFPAEDQKIIDKHRFNYAQSLLNYCLKQHGQIHG 361
>U97003-2|AAB52271.2| 376|Caenorhabditis elegans Hypothetical
protein F47C10.1 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 452 DRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGLKN-KQEVDVLREKMFL-CLDEYC 279
DR+ L K+ L + EY+ + I+ P + GL QE+ ++K + L EYC
Sbjct: 261 DRIQEMLVTKICGLCLTPEEYILTQIILFCTPRLTGLSQFAQEIIGEQQKKYCNSLLEYC 320
Query: 278 RRSR 267
+ +R
Sbjct: 321 KLTR 324
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 437 ELSLK-MRSLRMDQAEYVALKAIILLNPDVKGLKNKQEVDV 318
+L LK R L++D E+ A KA+ LNP G+ + ++ +
Sbjct: 299 DLVLKPFRDLQLDATEFAAFKAVTFLNPGPGGISIRAKLSL 339
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -1
Query: 449 RVLSELSLKMRSLRMDQAEYVALKAIILLNPDVKGL--KNKQEVDVLREKMFLCLDEYC 279
R+L+ + ++++ + EY+ L I++ NP++ GL K + +K L ++C
Sbjct: 243 RLLTTPVKPLIAMKLTETEYLLLGIIVICNPEIDGLSPSGKAIITAFLQKTINVLLQFC 301
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 ILQSLYVRIEEYDGLERDVLGLVHAEGAHLERQLGEHAVE-DLPHAGLQRGVAVQRHAW 509
IL+ + R E DG + L L+H EG L ++ EH E H +Q R W
Sbjct: 2554 ILEQHHERKAEIDGRSEE-LRLLHEEGQALNQEQPEHKAEVQRAHKRVQNSEHQLRQTW 2611
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 ILQSLYVRIEEYDGLERDVLGLVHAEGAHLERQLGEHAVE-DLPHAGLQRGVAVQRHAW 509
IL+ + R E DG + L L+H EG L ++ EH E H +Q R W
Sbjct: 2554 ILEQHHERKAEIDGRSEE-LRLLHEEGQALNQEQPEHKAEVQRAHKRVQNSEHQLRQTW 2611
>AY204185-1|AAO39189.1| 400|Caenorhabditis elegans nuclear receptor
NHR-101 protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 491 RNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVK-GLKNKQEVDVL 315
R S L Q+ D VL R + ++ E+ A KAI LNPD L+ K ++
Sbjct: 272 RPSGLNRKKYQVLDLVLKPF----REIDINFNEFAAFKAITFLNPDADVSLQAKLAINEE 327
Query: 314 REKMFLCLDEYCRRSRGGEE 255
R + L +Y R+ G E+
Sbjct: 328 RISVTKQLYDYMVRNDGIEK 347
>AL022272-4|CAC42310.2| 391|Caenorhabditis elegans Hypothetical
protein H12C20.6a protein.
Length = 391
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 491 RNSALQAGVGQIFDRVLSELSLKMRSLRMDQAEYVALKAIILLNPDVK-GLKNKQEVDVL 315
R S L Q+ D VL R + ++ E+ A KAI LNPD L+ K ++
Sbjct: 263 RPSGLNRKKYQVLDLVLKPF----REIDINFNEFAAFKAITFLNPDADVSLQAKLAINEE 318
Query: 314 REKMFLCLDEYCRRSRGGEE 255
R + L +Y R+ G E+
Sbjct: 319 RISVTKQLYDYMVRNDGIEK 338
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 ILQSLYVRIEEYDGLERDVLGLVHAEGAHLERQLGEHAVE-DLPHAGLQRGVAVQRHAW 509
IL+ + R E DG + L L+H EG L ++ EH E H +Q R W
Sbjct: 2554 ILEQHHERKAEIDGRSEE-LRLLHEEGQALNQEQPEHKAEVQRAHKRVQNSEHQLRQTW 2611
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 328 SCLFFNPFTSGLRSMMALSATYSAWSMRRER 420
+C+ FNPF+ + + ++ T + W MR R
Sbjct: 268 NCITFNPFSEYILATGSVDKTVALWDMRNMR 298
>U53149-4|AAA96120.1| 956|Caenorhabditis elegans Patched related
family protein 1 protein.
Length = 956
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -1
Query: 149 ELVHPRRALQPRAT----HRHQHHVGGLIQLLNVDMPTSTCKFYT 27
E + + + P AT ++HH+ + LN++ P ST ++YT
Sbjct: 642 EFENTQYTMHPNATMIWLRAYEHHLETEVHELNIEKPNSTVEWYT 686
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,581
Number of Sequences: 27780
Number of extensions: 221873
Number of successful extensions: 839
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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