Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_D06
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 240 2e-64
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 240 2e-64
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.79
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 4.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 240 bits (587), Expect = 2e-64
Identities = 116/191 (60%), Positives = 138/191 (72%)
Frame = -3
Query: 682 IPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSF 503
+ + S F Q+EMID I T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +
Sbjct: 203 VDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQW 262
Query: 502 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDPSEKSITPMGGFPHYG 323
TVARAG GY HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG
Sbjct: 263 TVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYG 315
Query: 322 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 143
V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 316 VVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375
Query: 142 KAAFMGTLKKD 110
F+GTLKKD
Sbjct: 376 AKQFLGTLKKD 386
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 774 ATKEGSHYGIQXXXGTXEDKVKWAREHLE 688
A K+ IQ G+ DKV+WAREH E
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFE 200
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 240 bits (587), Expect = 2e-64
Identities = 116/191 (60%), Positives = 138/191 (72%)
Frame = -3
Query: 682 IPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKXLRKVACIGAWHPSRVSF 503
+ + S F Q+EMID I T+RW TK+LPRKTH+ LRKVACIGAWHP+ V +
Sbjct: 203 VDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQW 262
Query: 502 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDPSEKSITPMGGFPHYG 323
TVARAG GY HRT++N KIYRIG G D K NAST++D +EK ITPMGGF YG
Sbjct: 263 TVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYG 315
Query: 322 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 143
V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 316 VVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375
Query: 142 KAAFMGTLKKD 110
F+GTLKKD
Sbjct: 376 AKQFLGTLKKD 386
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 774 ATKEGSHYGIQXXXGTXEDKVKWAREHLE 688
A K+ IQ G+ DKV+WAREH E
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFE 200
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.79
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 723 EDKVKWAREHLENLSLSILCLP 658
E + WA+E+++ S+LCLP
Sbjct: 337 EQTITWAKEYIKKAKDSLLCLP 358
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 377 LSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
L RC++ F +LF S S + FL S + I + +S
Sbjct: 112 LFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 131 HGYTQEGSYSRRSCGYHNPS 72
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 272 FRSHAATLDHHKVVVYFTIMGETSHRCNGFLRRI-ILSRCIVFNNFAILFVDSL 430
F S +++LD + + +G+ + L+RI + S CI++ + A F DSL
Sbjct: 294 FISQSSSLDESLFALVWGCLGDLAPSVAISLQRIKVSSLCILYPSLACCFADSL 347
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 NGFLRRIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,123
Number of Sequences: 5004
Number of extensions: 67105
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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