Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_D05
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    34   0.020
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    28   1.7  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   7.0  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    26   7.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   7.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   9.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.3  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   9.3  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 136 CYRCQLYGHSARNCHARPRCVKC--LGDHATLDC 41
           CY C  YGH AR+C    +C  C  +G H + +C
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIG-HRSFEC 150



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -1

Query: 145 PG-QCYRCQLYGHSARNCHARPRCVKC-LGDHATLDCVRDRETAT 17
           PG +CY C   GH AR C     C  C    H   +C   ++  T
Sbjct: 15  PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -1

Query: 193 CGLSGISIEAPHRRGTPGQ---CYRCQLYGHSARNC 95
           CG +G  +        P Q   CY+C   GH AR+C
Sbjct: 63  CGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
 Frame = -1

Query: 136 CYRCQLYGHSARNCHARP------RCVKC-LGDHATLDC 41
           CY C   GH  R+C + P       C KC    H   DC
Sbjct: 60  CYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 244 LEPTPEAKKKIACLTTICGLSGISIEAPHRRGTP--GQCYRCQLYGHSARNCHARPR 80
           ++  PEAK  ++ +   CG    S+ A  ++G     +C+ C   GH +  C   P+
Sbjct: 89  VQDCPEAKDNVS-ICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPK 144


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = -1

Query: 535  KINYTHARNVAHGI---QIKVATPGDHRALSAYLRKENIGFHTYALQEDRE--LRVVIRG 371
            +++YT  +  AH      +++A   ++++L+AY    N+  H  + ++DR   L  ++ G
Sbjct: 844  ELSYTLFKKAAHVFTPEDLRLAVE-EYKSLNAYTTAVNLALHVASARDDRNQALSYLVDG 902

Query: 370  VPK 362
            +P+
Sbjct: 903  MPE 905


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 259 MILVALEPTPEAKKKIACLTTIC--GLSGISIEAPHRRGTPGQ-CYRCQLYGHSARNC 95
           M  V+ +   E + K+A  T I       I+   P +   PG  CYRC   GH  + C
Sbjct: 141 MFQVSSDQWRETQDKMASATPIYKPNQRRIAASVPDKPPPPGYICYRCGQKGHWIQAC 198


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 135 HCPGVPRL-WGASIEIPDRPQI 197
           HCPGVP L  G  I++ D P +
Sbjct: 104 HCPGVPCLIVGTQIDLRDDPSV 125


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 292 MHSGRGKQPYNMILVALEPTPEAKKKIACLTTIC--GLSGISIEAPHR 155
           +++G G+ P N+++   +P    K+K+ACL   C  G  G+ +  P +
Sbjct: 25  IYNGEGR-PENLVVGEKKP----KRKVACLVGYCGSGYHGMQLNPPSK 67


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 713 FVCFVRGVPGLHGASTXLPRVRXG 784
           FVC + GVP ++G  T    VR G
Sbjct: 288 FVCVLYGVPSMYGVVTLPYSVREG 311


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = -1

Query: 217  KIACLTTICGLSGISIEAPHRRGTP---GQCYRCQLYGHSARNCHARPR 80
            K  CL+   G     I A   +  P     CY+C    H+ R C  R R
Sbjct: 1776 KDECLSCTLGNPDTEIRAHTGKACPVRLSTCYKCGKADHNLRECKLRIR 1824


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = -1

Query: 217  KIACLTTICGLSGISIEAPHRRGTP---GQCYRCQLYGHSARNCHARPR 80
            K  CL+   G     I A   +  P     CY+C    H+ R C  R R
Sbjct: 1776 KDECLSCTLGNPDTEIRAHTGKACPVRLSTCYKCGKADHNLRECKLRIR 1824


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 592 LILQEKTAWNRVSQALQANKINYTHARNVAHG 497
           LILQ+ +  N V++ +  N++  THAR +  G
Sbjct: 480 LILQQISEQNMVAEDISDNELAKTHARYLIGG 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,041
Number of Sequences: 5004
Number of extensions: 54617
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)