Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C24
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.4  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.8  
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    29   5.8  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   5.8  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.8  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 80  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 652  HTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGGFAPLFSS 479
            ++PT+P    TS S +P +P    ++P   P  S  +P    T  S       ++P   S
Sbjct: 1690 YSPTSPSYSPTSPSYSPTSP---SYSP-TSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPS 1745

Query: 478  E**ITSFAPY*SSFHAYSAPLLQLTPSSKTS 386
                 S A Y S  HAYS    +L+P S+TS
Sbjct: 1746 Y--NPSSAKY-SPSHAYSPSSPRLSPYSQTS 1773


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = -1

Query: 652  HTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSA-YLTPSSLGMXKG-GFAPLF 485
            ++PT+P    TS + +P +P     +PG  P   S +PS+    PSS+       ++P  
Sbjct: 1766 YSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSP-- 1823

Query: 484  SSE**ITSFAP-Y*SSFHAYSAPLLQLTPSSK 392
            SS    +S +P Y  +  +YS P    +P+S+
Sbjct: 1824 SSPNYYSSTSPTYSPTSPSYSQPSPSYSPTSR 1855


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 239  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 59   ILHSF 45
            +LHSF
Sbjct: 1408 LLHSF 1412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,467,797
Number of Sequences: 37544
Number of extensions: 435701
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)