Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C22
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    30   0.34 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   4.2  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.8  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.8  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 26/115 (22%), Positives = 49/115 (42%)
 Frame = -1

Query: 403 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 224
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 223 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSG*SVDDFRSWRGVVLGRAASCC 59
                R+   + F+     + R G   ++C  SG  V D  S+  + LG  ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +3

Query: 27  SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYPEPRHRTELYPDLR-SRDARVKKKTDSI 203
           S  +  S   SQH   L    P  E+KS  D P PR +   +      R  R  K  D+ 
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDD-PSPRRKPSFFSKSNLKRKYRYLKNPDAW 192

Query: 204 DL 209
           +L
Sbjct: 193 NL 194


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
 Frame = +3

Query: 27  SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYPEPRHRTELYPDLRSRDARVK------- 185
           S  AG SL  S  ++  PS+        S   P  R  + + P + +R +R +       
Sbjct: 210 SKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSSIAP-IGTRPSRKEIAFSNSS 268

Query: 186 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLP 329
             TD   LR PN      +          S   + P S GS+VS SLP
Sbjct: 269 TPTDQT-LRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLP 315


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 475 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 326
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 26/112 (23%), Positives = 42/112 (37%)
 Frame = -1

Query: 469 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 290
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 289 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC 134
                DF + +S S+    ++S  G  R            R R +G NS  C
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDC 371


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 115 VDDFRSWRGVVLGRAASCCDLLRLS 41
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,093
Number of Sequences: 5004
Number of extensions: 61352
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)