Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_C22
         (820 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    50   8e-06
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    32   2.9  
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             32   2.9  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    32   2.9  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    32   2.9  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     32   2.9  
BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.      30   8.8  
AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type ...    30   8.8  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 50.4 bits (115), Expect = 8e-06
 Identities = 25/43 (58%), Positives = 28/43 (65%)
 Frame = +3

Query: 591 IGXADIEGSKSNVAMNAWLPQASYPXXXXXXXXXXKTLYTKGS 719
           IG ADIEGSKS+VAMNAW PQASYP          K   ++GS
Sbjct: 2   IGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLKPKRSEGS 44


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
            SRm300 protein.
          Length = 2296

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 84   TTPRQERKSSTDYPEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR 263
            T PR  R  S   PEP  ++      RS  +  + KT S   R P+   R + R    +R
Sbjct: 1720 TPPRHRRSPSVSSPEPAEKSRSSRRRRSASS-PRTKTTSRRGRSPSPKPRGLQRSRSRSR 1778

Query: 264  LVKSHCLEPPDSRGSTVSIS 323
              K+      D  GS+ S S
Sbjct: 1779 REKTRTTRRRDRSGSSQSTS 1798


>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 84  TTPRQERKSSTDYPEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR 263
           T PR  R  S   PEP  ++      RS  +  + KT S   R P+   R + R    +R
Sbjct: 752 TPPRHRRSPSVSSPEPAEKSRSSRRRRSASS-PRTKTTSRRGRSPSPKPRGLQRSRSRSR 810

Query: 264 LVKSHCLEPPDSRGSTVSIS 323
             K+      D  GS+ S S
Sbjct: 811 REKTRTTRRRDRSGSSQSTS 830


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 84   TTPRQERKSSTDYPEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR 263
            T PR  R  S   PEP  ++      RS  +  + KT S   R P+   R + R    +R
Sbjct: 1720 TPPRHRRSPSVSSPEPAEKSRSSRRRRSASS-PRTKTTSRRGRSPSPKPRGLQRSRSRSR 1778

Query: 264  LVKSHCLEPPDSRGSTVSIS 323
              K+      D  GS+ S S
Sbjct: 1779 REKTRTTRRRDRSGSSQSTS 1798


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
           protein.
          Length = 1275

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 84  TTPRQERKSSTDYPEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR 263
           T PR  R  S   PEP  ++      RS  +  + KT S   R P+   R + R    +R
Sbjct: 243 TPPRHRRSPSVSSPEPAEKSRSSRRRRSASS-PRTKTTSRRGRSPSPKPRGLQRSRSRSR 301

Query: 264 LVKSHCLEPPDSRGSTVSIS 323
             K+      D  GS+ S S
Sbjct: 302 REKTRTTRRRDRSGSSQSTS 321


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 84   TTPRQERKSSTDYPEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR 263
            T PR  R  S   PEP  ++      RS  +  + KT S   R P+   R + R    +R
Sbjct: 1768 TPPRHRRSPSVSSPEPAEKSRSSRRRRSASS-PRTKTTSRRGRSPSPKPRGLQRSRSRSR 1826

Query: 264  LVKSHCLEPPDSRGSTVSIS 323
              K+      D  GS+ S S
Sbjct: 1827 REKTRTTRRRDRSGSSQSTS 1846


>BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 363 TPLRPKPA*PNPARICSLWSPESRE 289
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type
           containing 12 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 363 TPLRPKPA*PNPARICSLWSPESRE 289
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,885,825
Number of Sequences: 237096
Number of extensions: 2453903
Number of successful extensions: 5706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5699
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)