Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_C20
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 140 3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 140 3e-34
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 31 0.25
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.8
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 27 4.0
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 140 bits (338), Expect = 3e-34
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = -2
Query: 407 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 228
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 227 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 126
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 122 bits (294), Expect = 6e-29
Identities = 59/104 (56%), Positives = 73/104 (70%)
Frame = -1
Query: 741 KVKWAQRTFGRNLSLSILCLPXDEMIDCIGVTRGKGYKGVTSRWHTKKLPP*DTPRXLRK 562
KV+WA+ F + + + +EMID IGVTRGKG +G T+RW TK+LP T R LRK
Sbjct: 191 KVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR-KTHRGLRK 248
Query: 561 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 430
VACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 140 bits (338), Expect = 3e-34
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = -2
Query: 407 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 228
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 227 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 126
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 122 bits (294), Expect = 6e-29
Identities = 59/104 (56%), Positives = 73/104 (70%)
Frame = -1
Query: 741 KVKWAQRTFGRNLSLSILCLPXDEMIDCIGVTRGKGYKGVTSRWHTKKLPP*DTPRXLRK 562
KV+WA+ F + + + +EMID IGVTRGKG +G T+RW TK+LP T R LRK
Sbjct: 191 KVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR-KTHRGLRK 248
Query: 561 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 430
VACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 30.7 bits (66), Expect = 0.25
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 672 EMIDCIGVTRGKGYKGVTSRW 610
+ +D G+T+GKG+ GV RW
Sbjct: 149 QYVDVKGITKGKGFAGVMKRW 169
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 511 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 365
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 147 HGYTQEGSYSRRSCGYHNPS 88
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 533 EGCQAPMQATFLRXLGVSYGGSFFVCQR 616
EG + P + +R G++YG F++C R
Sbjct: 459 EGHKEPCKYLTVRKPGINYGRKFWICAR 486
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 394 SVDALFLITLPSFLWIPW 447
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 403 ALFLITLPSFLWIPWSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXPWC 582
++ + + +F W W ++ F H I L + + R PSS A + P +C
Sbjct: 70 SMMSVAIVAFQWFFWGYSLTFS-HEGGPYIGSLAN--FGLRQTLGRPSSGASSVPDILFC 126
Query: 583 VLRG 594
V +G
Sbjct: 127 VFQG 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,264
Number of Sequences: 5004
Number of extensions: 67388
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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