Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_C19
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.21
Identities = 30/136 (22%), Positives = 37/136 (27%), Gaps = 4/136 (2%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXP--XXXPXP 523
P P PP P + P P S P P S PP + P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 524 RPXXXXAXXXPXXXXLPXXXPPS--PQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPPF 697
P +P PPS P + ++ P P P P
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP-PVPV 1231
Query: 698 XPGXLPSXXPPXSKXP 745
P P S+ P
Sbjct: 1232 PTAKAPPVPAPSSEAP 1247
Score = 30.7 bits (66), Expect = 0.28
Identities = 32/142 (22%), Positives = 37/142 (26%), Gaps = 8/142 (5%)
Frame = +2
Query: 356 PTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXX 535
P PP P P P P P S +PP + P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 536 XXAXXXP------XXXXLPXXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPP- 694
A P P PP P+ + P P + P PPP
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPK-PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 695 -FXPGXLPSXXPPXSKXPXXXP 757
P PS P P P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAP 1217
Score = 28.7 bits (61), Expect = 1.1
Identities = 30/131 (22%), Positives = 33/131 (25%), Gaps = 7/131 (5%)
Frame = +2
Query: 374 PPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXP--XXXPXPRPXXXXAX 547
PP P + P P S P P S PP + P P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 548 XXPXXXXLP-----XXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXL 712
P P PP P+ P P A P P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 713 PSXXPPXSKXP 745
PS P P
Sbjct: 1222 PSAGLPPVPVP 1232
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/129 (21%), Positives = 32/129 (24%), Gaps = 1/129 (0%)
Frame = +2
Query: 374 PPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXAXXX 553
PP LP P P S P P + P + P P A
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 554 PXXXXLPXXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPP-PFXPGXLPSXXPP 730
P PP P+ P A P P P +PS PP
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 731 XSKXPXXXP 757
K P
Sbjct: 1142 VPKPSVAAP 1150
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXC---SPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPX 520
P PT PP P L PP +P AP S + P P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 521 PRPXXXXAXXXP 556
P P A P
Sbjct: 476 PPPAPAPAPAAP 487
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 357 PPTTXXXRXPXPPSSXPXXRXAPPXP 434
PP P PP S P APP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSS 487
P P PPP P + P P +P P P S P S+
Sbjct: 1708 PPPPMSVPPPPSAPPM--PAGPPSAPPPPLPASSAPSVPNPGDRSA 1751
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +1
Query: 634 PSPLPTNXHPSSXXXPXXPPXXPRXAPXXXPPRXQXPP 747
P+P+P P PP P A PP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,201
Number of Sequences: 5004
Number of extensions: 19764
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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