Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_C19
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 39 0.004
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.007
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.007
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 35 0.065
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 35 0.085
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 33 0.20
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.26
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.45
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 32 0.60
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 31 0.79
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.4
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 29 3.2
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 5.6
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 7.4
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 7.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 7.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 7.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 7.4
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 28 9.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 9.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 9.8
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 28 9.8
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/96 (33%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Frame = -1
Query: 627 GXXGRVXVW---IWGEGGXLXGRXXXXGXX*AXXXXGRGXGXXXGXNXXXELXXXXRGGR 457
G GR W WG GG G G GRG G G N GGR
Sbjct: 27 GGPGRWGGWGGNRWGGGGGPGGWGNNGGGGWGRGG-GRGGGDWGGNNGGGGNWGGNGGGR 85
Query: 456 XXEXXGXGAXGEXXGGXGXXRXGRXXGGGXSWVGXG 349
+ G G G GG G G GGG +W G G
Sbjct: 86 G-DWGGNGGGGRGGGGRGDW-GGNNNGGGGNWGGGG 119
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/123 (22%), Positives = 35/123 (28%), Gaps = 3/123 (2%)
Frame = +2
Query: 371 PPPXXLPXLXXPXPPX--CSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXA 544
PPP + + P PP +P P P S PP P P P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324
Query: 545 XXXPXXXXLPXXXPPSPQIQ-TXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXLPSX 721
P +P PP + P P + P PP G +P
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
Query: 722 XPP 730
PP
Sbjct: 385 PPP 387
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP SS PPPP TP P P + PP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGP-PGMPGMPPPP 320
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 678 TPXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
TP PP PPPP P P P PP
Sbjct: 284 TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P P S G PPPP P P + PP
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/123 (22%), Positives = 35/123 (28%), Gaps = 3/123 (2%)
Frame = +2
Query: 371 PPPXXLPXLXXPXPPX--CSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXA 544
PPP + + P PP +P P P S PP P P P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334
Query: 545 XXXPXXXXLPXXXPPSPQIQ-TXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXLPSX 721
P +P PP + P P + P PP G +P
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
Query: 722 XPP 730
PP
Sbjct: 395 PPP 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP SS PPPP TP P P + PP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGP-PGMPGMPPPP 330
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 678 TPXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
TP PP PPPP P P P PP
Sbjct: 294 TPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P P S G PPPP P P + PP
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 395
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 35.1 bits (77), Expect = 0.065
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPP 466
P P PPP P P PP C P P P PP
Sbjct: 48 PMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPP 86
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 34.7 bits (76), Expect = 0.085
Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Frame = -1
Query: 597 WGEGGXLXGRXXXXGXX*AXXXXG---RGXGXXXGXNXXXELXXXXRGGRXXEXXGXGAX 427
WG GG GR G G G G N RGG G G
Sbjct: 48 WGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGG 107
Query: 426 GEXXGGXGXXRXGRXXGGG 370
G GG G GR GGG
Sbjct: 108 GGGRGGGGGGGGGRGGGGG 126
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Frame = -1
Query: 588 GGXLXGRXXXXGXX*AXXXXGRGXGXXXGXNXXXELXXXXRGGRXXEXXGXGAXGEXXGG 409
GG GR G G G G G N + RGG G G G+ GG
Sbjct: 76 GGRGGGRGGNGGFGDNGGLRG-GNGGGRGGNGGFDDNGGGRGGNGGGRGGTGGFGDNGGG 134
Query: 408 XGXXRXGR-XXGGGXSWVGXG 349
G GR GGG + G G
Sbjct: 135 RGGNGGGRGGNGGGNNGGGRG 155
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 356 PTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPP 466
P PPP P P PP C P P P PP
Sbjct: 41 PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPX-LXXPXPPXCSP-XAPXPXXSXXLPP 466
P P PPP P L P PP C P P P PP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPP 67
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.45
Identities = 38/138 (27%), Positives = 40/138 (28%), Gaps = 2/138 (1%)
Frame = -1
Query: 756 GXXXGXLXSGGXXXGSXPGXXGGGXGXXXXXXXXXXXXGARXLGXXGRVXVWIWGEGGXL 577
G G SGG GS G GGG G G+ G V G GG
Sbjct: 136 GGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGS---SGGGGYAVAPSGGGGCG 192
Query: 576 XGRXXXXGXX*AXXXXGRGXGXXXGXNXXXELXXXXRGGRXXEXXGXGAXGEXXGG--XG 403
G G G G G GG G G+ G GG G
Sbjct: 193 GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGG 252
Query: 402 XXRXGRXXGGGXSWVGXG 349
G GGG S G G
Sbjct: 253 GYSSGGSSGGGYSTGGGG 270
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.45
Identities = 38/138 (27%), Positives = 40/138 (28%), Gaps = 2/138 (1%)
Frame = -1
Query: 756 GXXXGXLXSGGXXXGSXPGXXGGGXGXXXXXXXXXXXXGARXLGXXGRVXVWIWGEGGXL 577
G G SGG GS G GGG G G+ G V G GG
Sbjct: 136 GGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGS---SGGGGYAVAPSGGGGCG 192
Query: 576 XGRXXXXGXX*AXXXXGRGXGXXXGXNXXXELXXXXRGGRXXEXXGXGAXGEXXGG--XG 403
G G G G G GG G G+ G GG G
Sbjct: 193 GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGG 252
Query: 402 XXRXGRXXGGGXSWVGXG 349
G GGG S G G
Sbjct: 253 GYSSGGSSGGGYSTGGGG 270
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/92 (23%), Positives = 24/92 (26%), Gaps = 1/92 (1%)
Frame = +2
Query: 356 PTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLP-PRXXXXSSXXXXXPXXXPXPRPX 532
P PPP P P P AP P + P P P P P P
Sbjct: 45 PQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQ 104
Query: 533 XXXAXXXPXXXXLPXXXPPSPQIQTXTLPXXP 628
P P P+P P P
Sbjct: 105 HAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPP 136
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXP 442
P P PPP P P PP P P P
Sbjct: 125 PAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Frame = -1
Query: 594 GEGGXLXG-RXXXXGXX*AXXXXGRGXGXXXGXNXXXELXXXXR-GGRXXEXXGXGAXGE 421
G GG G R G GRG G G GGR G G G
Sbjct: 34 GRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFRGGRGGGDRGGFGGRGSPRGGFGGRGS 93
Query: 420 XXGGXGXXRXGRXXGGG 370
GG G R GR GG
Sbjct: 94 PRGGRGSPRGGRGGAGG 110
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP S PPPP P T P L PP
Sbjct: 1344 PPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPP 1378
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 696 SSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
+S+ S PPPP P P P + PP
Sbjct: 1330 TSRSSSPSPPPPPPPPPPPSDDLTPVPPPP 1359
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 681 PXPPXSSQ-GXSXXPPPPXPXTP-XPXPXXXXLXXPP 785
P PP S+ G S PPPP P P P P PP
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPP 161
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +1
Query: 625 PQXPSPLPTNXHPSSXXXPXXPPXXPRXAPXXXPPRXQXPPXLXP 759
P P P + S P PP PR P PP + PP P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP-PRRPPMTPP 165
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/82 (24%), Positives = 21/82 (25%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRP 529
P T PPP LP + PP P P PP P P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 530 XXXXAXXXPXXXXLPXXXPPSP 595
P PP P
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/82 (24%), Positives = 21/82 (25%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRP 529
P T PPP LP + PP P P PP P P P
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 530 XXXXAXXXPXXXXLPXXXPPSP 595
P PP P
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/82 (24%), Positives = 21/82 (25%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRP 529
P T PPP LP + PP P P PP P P P
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 530 XXXXAXXXPXXXXLPXXXPPSP 595
P PP P
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPPP 371
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXC-SPXAPXPXX----SXXLPPRXXXXSSXXXXXPXXX 514
P PT PPP P P PP SP P P + LPP S
Sbjct: 274 PPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Query: 515 PXPRPXXXXAXXXPXXXXLPXXXPPS 592
P PR P P PP+
Sbjct: 331 PPPRQKRQAPERSPPTGSPPTGSPPT 356
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/129 (24%), Positives = 35/129 (27%)
Frame = +2
Query: 371 PPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXAXX 550
PPP P L P P A P PPR + P P P P +
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPP-----PPR----TGSPPPPPTGSPPP-PPAGGSPP 290
Query: 551 XPXXXXLPXXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXLPSXXPP 730
P P PP T +LP P PPP P PP
Sbjct: 291 PPRAGSPPPPPPPRGSPPTGSLPP-----PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
Query: 731 XSKXPXXXP 757
P P
Sbjct: 346 TGSPPTGSP 354
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXC-SPXAPXPXX----SXXLPPRXXXXSSXXXXXPXXX 514
P PT PPP P P PP SP P P + LPP S
Sbjct: 295 PPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Query: 515 PXPRPXXXXAXXXPXXXXLPXXXPPS 592
P PR P P PP+
Sbjct: 352 PPPRQKRQAPERSPPTGSPPTGSPPT 377
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/129 (24%), Positives = 35/129 (27%)
Frame = +2
Query: 371 PPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXAXX 550
PPP P L P P A P PPR + P P P P +
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPP-----PPR----TGSPPPPPTGSPPP-PPAGGSPP 311
Query: 551 XPXXXXLPXXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXLPSXXPP 730
P P PP T +LP P PPP P PP
Sbjct: 312 PPRAGSPPPPPPPRGSPPTGSLPP-----PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
Query: 731 XSKXPXXXP 757
P P
Sbjct: 367 TGSPPTGSP 375
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXC-SPXAPXPXX----SXXLPPRXXXXSSXXXXXPXXX 514
P PT PPP P P PP SP P P + LPP S
Sbjct: 280 PPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Query: 515 PXPRPXXXXAXXXPXXXXLPXXXPPS 592
P PR P P PP+
Sbjct: 337 PPPRQKRQAPERSPPTGSPPTGSPPT 362
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/129 (24%), Positives = 35/129 (27%)
Frame = +2
Query: 371 PPPXXLPXLXXPXPPXCSPXAPXPXXSXXLPPRXXXXSSXXXXXPXXXPXPRPXXXXAXX 550
PPP P L P P A P PPR + P P P P +
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPP-----PPR----TGSPPPPPTGSPPP-PPAGGSPP 296
Query: 551 XPXXXXLPXXXPPSPQIQTXTLPXXPNXRAXXXXXXXXXXXXXPXPPPFXPGXLPSXXPP 730
P P PP T +LP P PPP P PP
Sbjct: 297 PPRAGSPPPPPPPRGSPPTGSLPP-----PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
Query: 731 XSKXPXXXP 757
P P
Sbjct: 352 TGSPPTGSP 360
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 350 PXPTHDXPPPXXLPXLXXPXPPXC-SPXAPXP 442
P P D PPP P P PP C P P P
Sbjct: 41 PPPCFDCPPP--APIFVAPPPPPCFGPACPPP 70
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP ++ S PPPP P P P + PP
Sbjct: 501 PLPPIATP--SSVPPPPPPPPPPPPALEQEISGPP 533
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 616 SXXPQXPSPLPTNXHPSSXXXPXXPPXXPRXA 711
S P P PLP PSS P PP P A
Sbjct: 493 SKSPPPPPPLPPIATPSSVPPPPPPPPPPPPA 524
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 634 PSPLPTNXHPSSXXXPXXPPXXPRXAPXXXPPRXQXPPXLXPXXXXSXXHPHTL 795
PSP P S P PP P P PP PP P P T+
Sbjct: 485 PSPQPAEVSKSP---PPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISGPPTV 535
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTP 746
P PP Q S PPPP P P
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPP 584
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 357 PPTTXXXRXPXPPSSXPXXRXAPPXPPXRXXP 452
PP R P PP PP PP R P
Sbjct: 249 PPGPPTRRPPGPPGPPTRRPPGPPGPPTRRPP 280
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -1
Query: 528 GRGXGXXXGXNXXXELXXXXRGGRXXEXXGXGAXGEXXGGXGXXRXGRXXGGG 370
GRG G RGG G G+ G G R GR GGG
Sbjct: 337 GRGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRGGDRGGDRGGFRGGRGVGGG 389
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP G PPPP P P PP
Sbjct: 662 PVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPP 696
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXPXXXXLXXPP 785
P PP G PPPP P P PP
Sbjct: 662 PVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPP 696
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 625 PQXPSPLPTNXHPSSXXXPXXPPXXPRXAPXXXPPRXQXPPXLXP 759
P P PLP + +P + P PP P P PP PP P
Sbjct: 74 PLPPPPLPLS-NPPAKPTPPPPPPKPTIRP---PPIPASPPPRPP 114
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 625 PQXPSPLPTNXHPSSXXXPXXPPXXPRXAPXXXPPRXQXPPXLXP 759
P P PLP + +P + P PP P P PP PP P
Sbjct: 296 PLPPPPLPLS-NPPAKPTPPPPPPKPTIRP---PPIPASPPPRPP 336
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXP 758
P PP QG PPP P P P
Sbjct: 234 PPPPPGFQGFQQGPPPSAPVYSAPPP 259
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 757 GXGXGVLGXGGGGXXEXPWXEXGGXGVXXW 668
G G G G GGG W + GG G W
Sbjct: 205 GPGGGGQGGYGGGNYGGGWGQQGGGGQGGW 234
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 757 GXGXGVLGXGGGGXXEXPWXEXGGXGVXXW 668
G G G G GGG W + GG G W
Sbjct: 243 GPGGGGQGGYGGGNYGGGWGQQGGGGQGGW 272
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 681 PXPPXSSQGXSXXPPPPXPXTPXPXP 758
P P + + PPPP P P P P
Sbjct: 71 PPQPYAQSPIAAVPPPPPPPPPQPAP 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,222
Number of Sequences: 27780
Number of extensions: 177392
Number of successful extensions: 1990
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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